Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_09935 and PS417_09940 are separated by 64 nucleotidesPS417_09940 and PS417_09945 are separated by 495 nucleotidesPS417_09945 and PS417_09955 are separated by 592 nucleotidesPS417_09955 and PS417_09960 are separated by 174 nucleotides PS417_09935: PS417_09935 - hypothetical protein, at 2,144,868 to 2,145,392 _09935 PS417_09940: PS417_09940 - hypothetical protein, at 2,145,457 to 2,145,711 _09940 PS417_09945: PS417_09945 - hypothetical protein, at 2,146,207 to 2,146,527 _09945 PS417_09955: PS417_09955 - hypothetical protein, at 2,147,120 to 2,147,338 _09955 PS417_09960: PS417_09960 - hypothetical protein, at 2,147,513 to 2,147,839 _09960
Group Condition PS417_09935 PS417_09940 PS417_09945 PS417_09955 PS417_09960
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 N.D. N.D. -0.4 -1.9
carbon source L-Valine (C) -0.6 N.D. N.D. -0.8 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.6 N.D. N.D. -0.4 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 N.D. N.D. -0.1 -0.4
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 N.D. N.D. +0.2 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 N.D. N.D. -0.3 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.7 N.D. N.D. +0.3 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.7 N.D. N.D. +0.2 -0.3
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.3 N.D. N.D. +0.2 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 N.D. N.D. +0.4 +0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.1 N.D. N.D. +0.2 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 N.D. N.D. +0.4 -0.0
root root sample 6; outgrowth in LB -1.2 N.D. N.D. +0.1 +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.2 N.D. N.D. +0.6 +0.1
solid stress Fraxetin 3 mM; solid stress +0.3 N.D. N.D. +0.2 -0.6
phage P. simiae ORA MOI 10 +0.5 N.D. N.D. -0.3 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 N.D. N.D. +0.5 +0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.5 N.D. N.D. +0.5 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 N.D. N.D. +0.3 +0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 N.D. N.D. +0.7 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 N.D. N.D. +0.7 +0.3
phage JP1 MOI 0.1 -0.2 N.D. N.D. -0.4 +1.0
phage JP1 MOI 10 -0.3 N.D. N.D. +0.2 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 N.D. N.D. +0.2 +1.0
stress methylglyoxal 0.032 vol% +0.9 N.D. N.D. -0.0 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.1 N.D. N.D. +0.3 +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 N.D. N.D. +0.2 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 N.D. N.D. +0.1 +0.4
phage JP1 MOI 1 +0.3 N.D. N.D. +0.8 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.1 N.D. N.D. +1.0 +0.6
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