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Cofit
Protein
Homologs
Fitness for 5 genes in
Hydrogenophaga sp. GW460-11-11-14-LB1
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1947 and GFF1948 are separated by 135 nucleotides
GFF1948 and GFF1949 overlap by 4 nucleotides
GFF1949 and GFF1950 are separated by 98 nucleotides
GFF1950 and GFF1951 are separated by 4 nucleotides
GFF1947 - Cyanate ABC transporter, substrate binding protein, at 819,889 to 821,310
GFF1947
GFF1948 - Transcriptional regulatory protein UhpA, at 821,446 to 822,129
GFF1948
GFF1949 - Sensory box histidine kinase, at 822,126 to 823,340
GFF1949
GFF1950 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 823,439 to 824,020
GFF1950
GFF1951 - Integral membrane protein TerC, at 824,025 to 824,972
GFF1951
Group
Condition
GFF1947
GFF1948
GFF1949
GFF1950
GFF1951
carbon source
Ying_Others16 rep A; time point 3
+0.0
-0.0
-0.9
-0.1
-0.1
carbon source
Ying_all64 rep A; time point 1
+0.0
-0.1
-1.1
+0.1
+0.0
carbon source
Ying_Nucleobase14 rep C; time point 1
+0.1
-0.1
-1.2
+0.2
+0.1
carbon source
Ying_Nucleobase14 rep C; time point 2
-0.1
+0.1
-1.0
+0.2
-0.1
carbon source
Ying_sugar7 rep A; time point 3
+0.1
-0.1
-0.5
-0.1
-0.2
carbon source
Ying_AminoAcid20 rep B; time point 1
+0.1
-0.1
-0.7
+0.0
-0.1
carbon source
Ying_sugar7 rep B; time point 3
-0.0
+0.0
-0.6
+0.0
+0.0
carbon source
Ying_all64 rep B; time point 3
-0.1
-0.1
-0.4
+0.1
+0.2
carbon source
Ying_sugar7 rep C; time point 3
+0.0
-0.1
-0.4
+0.2
-0.1
carbon source
Ying_OrganicAcid7 rep B; time point 1
+0.2
+0.0
-0.5
-0.0
+0.0
carbon source
Ying_OrganicAcid7 rep C; time point 3
-0.1
+0.1
-0.5
+0.3
+0.0
carbon source
Ying_AminoAcid20 rep C; time point 3
-0.2
+0.1
-0.2
+0.3
+0.0
carbon source
Ying_all64 rep C; time point 3
-0.0
+0.6
-0.6
-0.2
+0.2
carbon source
Ying_AminoAcid20 rep B; time point 3
-0.1
-0.0
-0.2
+0.2
+0.2
carbon source
Ying_AminoAcid20 rep A; time point 2
-0.0
+0.0
+0.3
-0.3
-0.1
carbon source
Ying_all64 rep A; time point 3
+0.1
+0.1
-0.6
+0.1
+0.3
carbon source
Ying_Nucleobase14 rep A; time point 1
+0.2
+0.1
+0.2
-0.2
-0.2
carbon source
Ying_OrganicAcid7 rep B; time point 2
+0.1
+0.1
+0.2
-0.2
+0.0
carbon source
Ying_Others16 rep A; time point 2
+0.1
+0.0
+0.2
-0.2
+0.1
carbon source
Ying_sugar7 rep A; time point 2
+0.0
-0.2
+0.5
-0.0
-0.1
carbon source
Ying_OrganicAcid7 rep C; time point 1
-0.1
+0.0
+0.2
+0.2
-0.1
carbon source
Ying_Others16 rep B; time point 3
+0.0
-0.2
+0.3
+0.2
-0.1
carbon source
Ying_OrganicAcid7 rep C; time point 2
+0.0
-0.1
+0.2
+0.2
-0.1
carbon source
Ying_all64 rep A; time point 2
+0.2
+0.2
+0.3
-0.4
+0.1
carbon source
Ying_sugar7 rep C; time point 2
-0.0
+0.0
+0.4
+0.1
-0.1
carbon source
Ying_Nucleobase14 rep A; time point 2
+0.0
+0.1
+0.4
-0.1
+0.0
carbon source
Ying_all64 rep B; time point 1
+0.1
+0.1
+0.3
-0.3
+0.2
carbon source
Ying_Others16 rep C; time point 1
+0.1
+0.1
+0.4
-0.1
-0.1
carbon source
Ying_sugar7 rep C; time point 1
+0.1
-0.1
+0.3
+0.3
-0.0
carbon source
Ying_all64 rep C; time point 2
+0.0
+0.5
+0.4
-0.1
+0.4
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