Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_09905 and PS417_09910 overlap by 4 nucleotidesPS417_09910 and PS417_09915 are separated by 53 nucleotidesPS417_09915 and PS417_09920 are separated by 102 nucleotidesPS417_09920 and PS417_09925 overlap by 11 nucleotides PS417_09905: PS417_09905 - exonuclease, at 2,141,126 to 2,141,788 _09905 PS417_09910: PS417_09910 - gifsy-1 prophage protein, at 2,141,785 to 2,142,753 _09910 PS417_09915: PS417_09915 - hypothetical protein, at 2,142,807 to 2,143,922 _09915 PS417_09920: PS417_09920 - hypothetical protein, at 2,144,025 to 2,144,252 _09920 PS417_09925: PS417_09925 - hypothetical protein, at 2,144,242 to 2,144,478 _09925
Group Condition PS417_09905 PS417_09910 PS417_09915 PS417_09920 PS417_09925
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.8 -2.8 +0.3 -0.1
stress Cisplatin 0.01 mg/ml +0.2 -0.1 -1.5 -0.6 -0.5
rhizosphere rhizosphere sample 2; outgrowth in LB +0.1 +0.3 -2.0 +0.0 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.3 -1.2 -0.2 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.1 -0.1 -1.8 +0.0 -0.3
carbon source L-Leucine (C) -0.2 +0.0 -1.2 -0.2 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.8 -0.4 -1.8 -0.7 -0.0
carbon source Inosine (C) -0.2 +0.0 -1.8 -0.0 +0.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -0.0 -0.9 -0.4 -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.4 -1.1 -0.1 -0.5
carbon source Trisodium citrate (C) +0.0 +0.2 -2.2 +0.1 +0.0
liquid stress 80% Methanol 3 mM; liquid stress +0.1 -0.4 -1.2 +0.1 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 -0.0 -1.5 -0.3 -0.3
soil soil sample 6; outgrowth in LB +0.5 -0.3 -2.3 +0.5 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 +0.4 -1.7 -0.4 +0.2
soil soil sample 8; outgrowth in LB +0.1 -0.0 -1.8 +0.0 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 -0.9 -0.9 +0.5 +0.2
seeds Growth on radish seeds for 72 hours -0.2 +0.0 -1.6 -0.3 +0.9
carbon source Carbon source D-Mannitol 2.5 mM -0.1 +0.4 -0.9 -0.5 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 +0.7 -0.2 -0.4 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 +0.8 -0.8 -0.0 -0.6
soil soil sample 5; outgrowth in LB +0.2 -0.8 +0.8 -0.6 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -1.1 +0.4 -0.0 +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.1 +1.0 -0.4 -0.5
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -0.5 -0.3 -0.0 +1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 +0.1 +1.1 -0.3 -0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +1.7 -0.9 +0.1 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 -0.0 +1.8 -0.2 -0.3
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.1 +0.0 +0.8 -0.5 +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.0 -0.3 +1.2 +0.3 +0.4
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