Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_09880	PS417_09885	PS417_09890	PS417_09895	PS417_09900
carbon source	L-Valine (C)	-0.6	-0.5	-0.1	N.D.	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.8	-0.8	+0.3	N.D.	+0.0
phage	Wcs_1	-0.8	-0.5	+0.2	N.D.	-0.2
carbon source	L-Valine (C)	-1.6	+0.2	+0.3	N.D.	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0	-0.2	+0.2	N.D.	-0.2
motility	inner cut, LB soft agar motility assay	-0.7	+0.2	+0.3	N.D.	-0.3
phage	P. simiae Grant Run MOI 10	-1.0	+0.6	+0.3	N.D.	-0.3
soil	soil sample 7; outgrowth in LB	-0.6	+0.2	-0.4	N.D.	+0.5
seeds	Growth on radish seeds for 72 hours	-0.7	-0.2	+0.4	N.D.	+0.2
carbon source	2'-Deoxyinosine 5 mM (C)	-0.5	+0.6	-0.2	N.D.	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.1	-0.4	-0.5	N.D.	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	+0.9	-0.4	N.D.	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.3	-0.9	+0.6	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	-0.1	-0.3	N.D.	+0.9
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.5	-0.3	+0.2	N.D.	+0.8
exudates	RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x	+0.6	+0.3	-0.3	N.D.	-0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.3	+0.2	N.D.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.5	+0.0	N.D.	+0.7
phage	P. simiae ORA MOI 0.1	-0.3	+0.4	+0.4	N.D.	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.4	+0.4	N.D.	+0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.7	+0.1	-0.3	N.D.	+0.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.2	+0.8	-0.2	N.D.	+1.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	+0.6	-0.0	N.D.	+0.4
soil	soil sample 5; outgrowth in LB	+0.5	-0.1	+0.1	N.D.	+1.0
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	+0.6	+0.6	+0.0	N.D.	+0.3
root	root sample 6; outgrowth in LB	+0.5	+0.0	+0.0	N.D.	+0.9
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.2	+0.3	+0.0	N.D.	+1.1
agar plate interaction control	Taped volatile agar plate with no fungus	+0.4	+0.4	+0.7	N.D.	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	+0.7	+0.2	N.D.	-0.0
stress	methylglyoxal 0.032 vol%	+0.6	+0.8	+0.4	N.D.	+0.3