Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_00965	PS417_00970	PS417_00975	PS417_00985	PS417_00990
phage	P. simiae OR1 MOI 0.1	-0.1	-0.4	-1.2	-0.7	-0.6
motility	inner cut, LB soft agar motility assay	+0.4	+0.0	-1.9	-0.9	-0.5
phage	JP1 MOI 10	-0.0	-0.7	-0.5	-1.2	-0.1
supernatant control	Vogels_fungal_media 0.1X	-0.1	-0.6	-0.5	-0.5	-0.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.6	-0.1	-1.2	-0.6	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.2	-2.0	-0.4	-0.3
motility	inner cut, LB soft agar motility assay	-0.5	-0.3	-0.7	-0.1	-0.5
agar plate interaction control	Taped volatile agar plate with no fungus	-0.4	+0.2	-0.9	+0.0	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.7	+0.1	-0.1	-0.7	-0.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.1	+0.2	-1.6	-0.4	+0.2
motility	outer cut, LB soft agar motility assay	-0.5	+0.3	-0.5	-0.8	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.1	-1.5	-0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.1	-1.3	+0.1	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	+0.7	-0.9	+0.6	-0.9
agar plate interaction control	Taped volatile agar plate with no fungus	+0.3	-0.2	-1.1	-0.3	+0.4
soil	soil sample 7; outgrowth in LB	+0.0	-0.4	+0.7	-1.0	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.1	+0.9	-0.6	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	+0.5	-1.0	+0.9	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.3	-1.0	+0.5	+0.6
carbon source	Xylitol (C)	-0.2	-0.2	+1.2	-0.3	+0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.2	+0.0	+1.2	-0.4	-0.3
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.6	-0.3	+0.9	-0.3	-0.0
phage	Wcs_1	-0.2	-0.1	+1.4	-0.4	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	+0.2	+0.9	-0.6	+0.3
carbon source	2'-Deoxyinosine 5 mM (C)	-0.3	+0.0	+1.5	-0.2	+0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	+0.2	+1.6	+0.1	-0.6
soil	soil sample 4; outgrowth in LB	+0.4	-0.2	+1.6	+0.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.6	+0.8	+0.4	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.4	-0.1	+0.9	+0.4	+0.7
seeds	Growth on radish seeds for 72 hours	+0.0	-0.0	+2.2	-0.7	+0.9