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Cofit
Protein
Homologs
Fitness for 5 genes in
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1931 and GFF1932 are separated by 67 nucleotides
GFF1932 and GFF1933 are separated by 149 nucleotides
GFF1933 and GFF1934 are separated by 48 nucleotides
GFF1934 and GFF1935 overlap by 1 nucleotides
GFF1931 - Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17), at 123,744 to 125,012
GFF1931
GFF1932 - Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2), at 125,080 to 125,994
GFF1932
GFF1933 - DedA protein, at 126,144 to 126,803
GFF1933
GFF1934 - tRNA pseudouridine synthase A (EC 4.2.1.70), at 126,852 to 127,664
GFF1934
GFF1935 - Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11), at 127,664 to 128,677
GFF1935
Group
Condition
GFF1931
GFF1932
GFF1933
GFF1934
GFF1935
phage
LB_plus_SM_buffer with ES18h1_phage 0.75 MOI
N.D.
N.D.
+0.1
-3.4
-2.1
phage
6H2_phage 10 MOI; agar plate assay
N.D.
N.D.
+0.6
-5.4
+0.1
phage
LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
N.D.
N.D.
-0.4
-2.4
-1.4
phage
Ffm_phage 10 MOI; agar plate assay
N.D.
N.D.
-0.1
-3.3
-0.6
phage
LB_plus_SM_buffer with Br60_phage 0.000005 MOI
N.D.
N.D.
-1.1
-1.8
-0.6
phage
LB_plus_SM_buffer with 6C2_phage 0.25 MOI
N.D.
N.D.
-1.0
-2.5
-0.0
phage
LB_plus_SM_buffer with 6D2_phage 0.75 MOI
N.D.
N.D.
+0.1
-2.5
-0.7
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.075 MOI
N.D.
N.D.
-3.0
+0.1
-0.2
phage
LB_plus_SM_buffer with phi19h1_phage 0.01875 MOI
N.D.
N.D.
+0.3
-2.3
-1.2
phage
LB_plus_SM_buffer with Br60_phage 0.00005 MOI
N.D.
N.D.
-1.0
-1.7
-0.4
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.0075 MOI
N.D.
N.D.
-2.0
-0.9
+0.1
micoeukaryotes
Dictyostellum sp.mixed culture-2
N.D.
N.D.
-0.2
-1.6
-0.6
micoeukaryotes
Acanthamoeba sp., muxed culture-2
N.D.
N.D.
+0.3
-2.3
-0.3
phage
LB_plus_SM_buffer with 6H2_phage 0.5 MOI
N.D.
N.D.
-0.3
-2.2
+0.1
phage
LB_plus_SM_buffer with Br60_phage 0.0000005 MOI
N.D.
N.D.
+0.4
-2.3
-0.4
phage
LB_plus_SM_buffer with P22_phage 15 MOI
N.D.
N.D.
-0.7
-1.2
-0.4
phage
LB_plus_SM_buffer with Ffm_phage 0.01875 MOI
N.D.
N.D.
-0.4
-1.2
-0.6
phage
LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
N.D.
N.D.
-0.7
-1.4
-0.1
micoeukaryotes
Dictyostellum sp.mixed culture-1
N.D.
N.D.
-0.0
-1.7
-0.5
micoeukaryotes
C.elegans, mixed culture-2
N.D.
N.D.
+0.0
-2.0
-0.2
phage
LB_plus_SM_buffer with phi19h1_phage 0.001875 MOI
N.D.
N.D.
+0.3
-1.6
-0.6
phage
LB_plus_SM_buffer with EIP30_phage 0.0000875 MOI
N.D.
N.D.
+0.5
-1.5
-0.9
phage
LB_plus_SM_buffer with FelixO1_phage 0.05 MOI
N.D.
N.D.
-4.9
+1.7
+1.4
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI
N.D.
N.D.
-3.2
+1.0
+0.7
phage
LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
N.D.
N.D.
-5.8
+3.2
+2.1
phage
LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
N.D.
N.D.
-0.8
+1.3
+0.7
phage
LB_plus_SM_buffer with EIP16_phage 8.75 MOI
N.D.
N.D.
-0.5
+1.0
+1.0
phage
LB_plus_SM_buffer with S16_phage 15 MOI
N.D.
N.D.
+0.6
+0.5
+1.1
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
N.D.
N.D.
-0.5
+1.8
+1.0
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
N.D.
N.D.
-0.1
+1.8
+0.8
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