Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_09815	PS417_09820	PS417_09825	PS417_09830	PS417_09835
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	N.D.	-0.3	-0.8	-0.2
liquid stress	Fraxetin 3 mM; liquid stress	-0.0	N.D.	-0.1	-0.9	-0.5
soil	soil sample 8; outgrowth in LB	-0.2	N.D.	-0.4	-0.6	-0.2
liquid stress	Fraxetin 3 mM; liquid stress	+0.2	N.D.	+0.1	-1.9	+0.2
root	root sample 6; outgrowth in LB	-0.3	N.D.	-0.3	-0.2	-0.6
soil	soil sample 2; outgrowth in LB	-0.5	N.D.	-0.8	-0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	N.D.	-0.5	-0.4	-0.3
solid stress	Fraxetin 3 mM; solid stress	+0.2	N.D.	-0.4	-1.0	-0.1
agar plate interaction control	Taped volatile agar plate with no fungus	+0.1	N.D.	-0.3	-0.6	-0.4
liquid stress	Scopoletin 3 mM; liquid stress	-0.1	N.D.	-0.1	-1.1	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	N.D.	-0.1	-0.8	-0.4
liquid stress	Fraxetin 3 mM; liquid stress	-0.1	N.D.	+0.4	-1.3	+0.2
solid stress	Scopoletin 3 mM; solid stress	-0.1	N.D.	+0.1	-0.9	+0.2
motility	outer cut, LB soft agar motility assay	+0.3	N.D.	+0.4	-0.5	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	N.D.	-0.3	-0.9	+0.2
liquid stress	Fraxetin 3 mM; liquid stress	-0.0	N.D.	+0.4	-1.0	+0.2
stress	methylglyoxal 0.032 vol%	-0.2	N.D.	+0.6	-0.7	-0.1
soil	soil sample 5; outgrowth in LB	-0.3	N.D.	+0.3	+0.4	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.7	N.D.	-0.2	-0.3	-0.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.0	N.D.	+0.3	-0.8	+0.3
seeds	Growth on radish seeds for 72 hours	+0.3	N.D.	+0.2	-0.8	+0.3
carbon source	2-Deoxy-D-Ribose 10 mM (C)	+0.2	N.D.	+0.2	-1.0	+0.4
carbon source	Carbon source D-Mannitol 2.5 mM	+0.2	N.D.	-0.3	-0.5	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	N.D.	-0.4	-0.5	+0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	N.D.	+0.2	-1.0	+0.4
phage	JP1 MOI 0.1	-0.4	N.D.	+0.0	+0.9	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	N.D.	+0.3	+0.4	+0.7
phage	P. simiae Grant Run MOI 0.1	+0.2	N.D.	+0.2	+0.7	+0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	N.D.	+1.0	+0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.0	N.D.	-0.0	+1.9	-0.2