Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_09795	PS417_09800	PS417_09805	PS417_09810	PS417_09815
nitrogen source	Cytidine (N)	+0.1	-3.1	-1.1	-2.0	-0.2
nitrogen source	Cytosine (N)	-0.0	-2.0	-0.9	-1.3	-0.2
phage	P. simiae ORA MOI 0.1	-0.1	-0.4	-0.8	-0.3	-0.1
phage	P. simiae ORA MOI 0.1	-0.2	+0.0	-0.6	-0.3	-0.4
phage	P. simiae Grant Run MOI 0.1	-0.2	-0.6	-0.5	-0.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.4	-0.4	-0.1	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-0.6	-0.5	-0.3	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.2	-0.6	+0.1	-0.3
phage	P. simiae ORA MOI 1	-0.1	-0.6	-0.3	-0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.8	-0.4	+0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.9	+0.3	-0.3	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	-0.9	-0.1	-0.1	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	-0.3	-0.4	-0.3	+0.1
motility	outer cut, LB soft agar motility assay	-0.2	-0.4	-0.4	-0.1	+0.3
root	root sample 6; outgrowth in LB	-0.4	-0.2	-0.3	+0.4	-0.3
soil	soil sample 2; outgrowth in LB	-0.1	+0.1	+0.3	-0.5	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	-0.8	-0.1	-0.2	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.4	-0.3	+0.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.7	+0.2	-0.2	+0.3
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	+0.1	+0.4	-0.5	-0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.6	-0.4	+0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.6	+0.1	+0.4	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.1	-0.7	+0.4	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+0.2	-0.5	-0.3	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	+0.8	-0.4	-0.0	-0.3
phage	P. simiae OR Antrim MOI 1	-0.1	+0.9	-0.6	+0.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.2	-0.4	+0.6	+0.4	-0.2
solid stress	Fraxetin 2 mM; solid stress	+0.1	+0.5	-0.5	+0.1	+0.2
agar plate interaction control	Taped volatile agar plate with no fungus	-0.0	+0.3	+0.9	-0.2	+0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+1.0	-0.3	+0.0	+0.5