Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_09780	PS417_09785	PS417_09790	PS417_09795	PS417_09800
nitrogen source	Cytidine (N)	+0.0	-0.2	-0.1	+0.1	-3.1
nitrogen source	Cytosine (N)	-0.0	-0.2	-0.0	-0.0	-2.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.6	-0.0	-0.1	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.2	-0.4	-0.0	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.1	-0.5	-0.3	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.2	-0.3	+0.1	+0.0	-1.0
carbon source	Carbon source D-Mannitol 10 mM	-0.2	-0.2	-0.3	+0.0	-0.6
carbon source	L-Valine (C)	-0.3	-0.3	-0.3	-0.4	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.5	+0.1	+0.0	-0.9
phage	JP1 MOI 10	-0.1	+0.2	-0.4	-0.1	-0.9
stress	Gentamicin 0.008 mg/ml	-0.3	+0.1	-0.8	-0.3	+0.4
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.2	-0.7	+0.3	-0.0	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.5	+0.3	+0.0	-0.4
phage	P. simiae ORA MOI 0.1	+0.1	-0.6	+0.3	-0.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.2	-0.6	+0.1	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4	-0.3	-0.2	+0.0	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.6	+0.5	+0.1	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.3	-0.4	+0.3	+0.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.4	+0.2	-0.0	-0.6
phage	P. simiae OR Antrim MOI 0.1	+0.1	+0.6	+0.2	+0.0	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-0.5	-0.1	-0.0	+0.8
seeds	Growth on radish seeds for 72 hours	+0.2	+0.0	+0.8	-0.2	-0.5
motility	inner cut, LB soft agar motility assay	-0.1	+0.5	+0.2	-0.2	+0.3
phage	P. simiae OR Antrim MOI 1	-0.1	+0.3	+0.5	-0.3	+0.3
phage	P. simiae OR Antrim MOI 1	-0.1	+0.0	+0.2	-0.1	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.6	+0.3	+0.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	+0.8	-0.2	+0.0	+0.6
stress	Phosphomycin 0.003 mg/ml	-0.1	+0.5	+0.3	-0.1	+0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.3	+0.1	+0.2	+1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	+1.1	+0.5	+0.2	+0.6