Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_09755	PS417_09765	PS417_09770	PS417_09775	PS417_09780
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	-0.2	-0.4	-0.7	-0.2
supernatant control	Vogels_fungal_media 0.1X	-0.2	+0.0	-0.1	-0.8	-0.3
stress	methylglyoxal 0.032 vol%	-0.0	-0.7	-0.3	+0.1	-0.3
phage	P. simiae OR1 MOI 0.1	-0.3	-0.1	+0.1	-0.4	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7	-0.4	-0.2	+0.4	-0.1
phage	P. simiae Grant Run MOI 10	+0.6	-0.4	-0.4	-0.5	-0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.1	-0.1	-0.7	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.1	+0.3	-0.9	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.0	-0.6	+0.5	-0.1
stress	Doxycycline hyclate 0.001 mg/ml	-0.4	+0.3	-0.4	-0.0	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	+0.2	+0.3	-0.5	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.1	+0.7	-0.4	-0.4
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.5	-0.3	+0.3	-0.5	+0.0
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.7	-0.1	+0.3	-0.6	-0.2
soil	soil sample 2; outgrowth in LB	+0.2	-0.0	+0.5	-0.5	+0.0
phage	P. simiae OR Antrim MOI 1	+0.6	+0.2	-0.3	-0.2	-0.1
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x	+0.2	-0.1	+0.5	-0.4	+0.2
seeds	Growth on radish seeds for 72 hours	-0.0	-0.2	+0.3	+0.6	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.1	+0.0	+0.7	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.4	+0.5	+0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	-0.3	+0.9	+0.2	-0.2
soil	soil sample 5; outgrowth in LB	+0.6	-0.4	+0.4	+0.1	-0.2
soil	soil sample 8; outgrowth in LB	+0.2	-0.2	+0.6	-0.1	+0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.8	+0.1	-0.2	-0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.4	-0.3	+1.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.2	-0.3	+0.5	+0.2
soil	soil sample 4; outgrowth in LB	+1.0	-0.1	-0.1	+0.4	-0.4
root	root sample 6; outgrowth in LB	+0.7	-0.1	+0.5	-0.1	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.4	+0.2	+0.2	-0.2
seeds	Growth on radish seeds for 72 hours	+0.0	-0.2	+0.5	+0.5	+0.2