Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_00085 and PS417_00090 overlap by 4 nucleotidesPS417_00090 and PS417_00095 are separated by 69 nucleotidesPS417_00095 and PS417_00100 are separated by 135 nucleotidesPS417_00100 and PS417_00110 are separated by 1212 nucleotides PS417_00085: PS417_00085 - 16S rRNA methyltransferase, at 18,722 to 20,032 _00085 PS417_00090: PS417_00090 - methionyl-tRNA formyltransferase, at 20,029 to 20,982 _00090 PS417_00095: PS417_00095 - peptide deformylase, at 21,052 to 21,558 _00095 PS417_00100: PS417_00100 - peptidoglycan-binding protein, at 21,694 to 22,470 _00100 PS417_00110: PS417_00110 - tRNA threonylcarbamoyladenosine biosynthesis protein RimN, at 23,683 to 24,240 _00110
Group Condition PS417_00085 PS417_00090 PS417_00095 PS417_00100 PS417_00110
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.7 N.D. N.D. -0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.6 N.D. N.D. -0.1 N.D.
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB -2.0 N.D. N.D. -0.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.4 N.D. N.D. -1.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.2 N.D. N.D. -0.2 N.D.
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -2.0 N.D. N.D. -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.9 N.D. N.D. -0.4 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -2.1 N.D. N.D. -0.0 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.5 N.D. N.D. -0.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.0 N.D. N.D. -0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.8 N.D. N.D. -0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.3 N.D. N.D. +0.5 N.D.
soil soil sample 5; outgrowth in LB -1.9 N.D. N.D. +0.0 N.D.
nophagecontrol Only library -1.5 N.D. N.D. -0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.5 N.D. N.D. -0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 N.D. N.D. -0.6 N.D.
motility outer cut, LB soft agar motility assay -0.9 N.D. N.D. -0.8 N.D.
seeds Growth on radish seeds for 72 hours -1.6 N.D. N.D. -0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.5 N.D. N.D. -0.1 N.D.
phage JP1 MOI 10 -1.5 N.D. N.D. -0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -1.8 N.D. N.D. +0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.2 N.D. N.D. -0.3 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.9 N.D. N.D. -0.6 N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml -1.7 N.D. N.D. +0.4 N.D.
soil soil sample 8; outgrowth in LB -1.4 N.D. N.D. +0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.5 N.D. N.D. +0.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 N.D. N.D. +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.1 N.D. N.D. +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.1 N.D. N.D. +0.5 N.D.
phage JP1 MOI 1 +1.0 N.D. N.D. -0.6 N.D.
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