Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_09645	PS417_09650	PS417_09655	PS417_09660	PS417_09665
phage	P. simiae Grant Run MOI 0.1	-0.1	-0.2	-1.7	+0.0	-0.1
carbon source	2'-Deoxyinosine 5 mM (C)	-0.1	-0.4	-1.2	-0.5	+0.8
phage	JP1 MOI 10	+0.1	-0.4	-0.9	+0.4	-0.6
stress	Choline chloride 300 mM	-0.2	-0.3	-0.7	-0.3	+0.3
soil	soil sample 5; outgrowth in LB	-0.1	-0.4	-0.6	+0.2	+0.3
phage	P. simiae OR Antrim MOI 10	+0.0	-0.6	-0.3	+0.3	+0.4
stress	Nalidixic 0.015 mg/ml	+0.1	+0.5	-0.7	-0.1	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-1.0	+0.2	+0.4	+0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.5	-0.3	+1.2	+0.3
seeds	Growth on radish seeds for 72 hours	-0.1	-0.4	+1.2	-0.1	+0.0
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.1	-0.1	-0.5	-0.1	+1.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.4	-0.6	+0.0	+0.3	+0.6
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.1	+0.1	-0.4	+0.0	+1.2
soil	soil sample 4; outgrowth in LB	-0.0	+0.3	-0.4	-0.1	+1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.4	+0.3	-0.4	-0.2	+0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.2	-0.1	-0.0	+1.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	-0.2	+0.2	+0.3	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.3	-0.4	+0.1	+1.2
root	root sample 6; outgrowth in LB	-0.1	+0.1	+0.2	-0.3	+1.6
carbon source	L-Valine (C)	+0.6	-0.0	+0.9	+0.6	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.1	-0.5	-0.0	+1.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.1	+0.2	+0.4	+0.9
stress	methylglyoxal 0.032 vol%	+0.4	-0.2	+0.7	+0.1	+0.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.2	-0.1	+0.0	-0.2	+1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.3	+0.4	+0.0	+1.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.0	-0.0	+0.3	+1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	+0.2	+1.0	+0.2	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	-0.2	+0.7	+0.1	+1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.1	-0.0	+0.3	+2.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.1	+0.4	+0.3	+2.0