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Fitness for 5 genes in
Pseudomonas simiae WCS417
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500 nt
PS417_09615 and PS417_09620 overlap by 1 nucleotides
PS417_09620 and PS417_09625 are separated by 14 nucleotides
PS417_09625 and PS417_09630 are separated by 29 nucleotides
PS417_09630 and PS417_09635 are separated by 1 nucleotides
PS417_09615: PS417_09615 - glycosyl transferase family 1, at 2,082,746 to 2,083,936
_09615
PS417_09620: PS417_09620 - lipopolysaccharide biosynthesis protein, at 2,083,936 to 2,085,927
_09620
PS417_09625: PS417_09625 - sugar ABC transporter substrate-binding protein, at 2,085,942 to 2,086,718
_09625
PS417_09630: PS417_09630 - glycosyl transferase, at 2,086,748 to 2,087,659
_09630
PS417_09635: PS417_09635 - mannose-1-phosphate guanylyltransferase, at 2,087,661 to 2,089,121
_09635
Group
Condition
PS417
_09615
PS417
_09620
PS417
_09625
PS417
_09630
PS417
_09635
solid stress
80% Methanol 2 mM; solid stress
-2.4
-1.2
-1.9
-0.4
-0.7
supernatant control
Vogels_fungal_media 0.1X
-1.2
-1.0
-2.2
-0.9
-0.8
solid stress
80% Methanol 3 mM; solid stress
-1.7
-0.8
-2.2
-0.5
-0.8
solid stress
Fraxetin 2 mM; solid stress
-1.5
-0.8
-1.1
-0.9
-0.9
solid stress
Fraxetin 3 mM; solid stress
-1.2
-1.0
-1.6
-0.9
-0.6
solid stress
80% Methanol 2 mM; solid stress
-2.2
-0.8
-1.2
-0.3
-0.2
stress
R2A with Fusaric 120 ug/mL
-1.3
-0.9
-1.3
-0.7
-0.4
stress
R2A with Fusaric 120 ug/mL
-2.3
-0.7
-0.9
-0.1
-0.4
solid stress
80% Methanol 2 mM; solid stress
-1.6
-0.6
-1.6
-0.3
-0.3
liquid stress
Fraxetin 3 mM; liquid stress
-1.0
-0.9
-0.8
-1.2
-0.4
solid stress
Fraxetin 3 mM; solid stress
-1.1
-1.0
-1.1
-0.4
-0.7
liquid stress
Fraxetin 3 mM; liquid stress
-1.0
-0.9
-0.8
-0.9
-0.5
stress
R2A with Fusaric 120 ug/mL
-1.7
-1.0
-0.9
+0.0
-0.5
solid stress
Fraxetin 2 mM; solid stress
-1.2
-0.9
-1.2
-0.4
-0.4
stress
R2A with Fusaric 120 ug/mL
-1.5
-0.9
-1.1
-0.1
-0.3
liquid stress
Fraxetin 3 mM; liquid stress
-0.9
-1.0
-1.0
-0.4
-0.6
liquid stress
Fraxetin 2 mM; liquid stress
-0.7
-0.6
-1.0
-0.8
-0.7
solid stress
Fraxetin 2 mM; solid stress
-1.0
-0.8
-0.9
-0.9
-0.3
stress
R2A with Fusaric 120 ug/mL
-1.4
-0.9
-1.1
-0.0
-0.4
solid stress
80% Methanol 0.5 mM; solid stress
-1.2
-0.9
-0.6
-0.6
-0.4
solid stress
Fraxetin 3 mM; solid stress
-0.8
-0.8
-1.0
-0.3
-0.7
liquid stress
Fraxetin 3 mM; liquid stress
-0.9
-1.0
-0.9
-0.5
-0.4
solid stress
Fraxetin 2 mM; solid stress
-1.4
-0.5
-0.8
-0.7
-0.2
solid stress
Scopoletin 0.5 mM; solid stress
-1.7
-0.6
-0.8
-0.2
-0.2
solid stress
Fraxetin 3 mM; solid stress
-1.1
-0.7
-0.3
-0.6
-0.7
solid stress
80% Methanol 1 mM; solid stress
-1.2
-0.8
-0.8
+0.3
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.7
+1.0
+0.9
+1.3
+0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
+0.0
+0.4
+3.0
-0.1
+1.1
in planta
Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
+0.5
+0.9
+1.6
+0.9
+0.6
in planta
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
+0.3
+1.2
+1.2
+1.1
+1.0
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