Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_09615 and PS417_09620 overlap by 1 nucleotidesPS417_09620 and PS417_09625 are separated by 14 nucleotidesPS417_09625 and PS417_09630 are separated by 29 nucleotidesPS417_09630 and PS417_09635 are separated by 1 nucleotides PS417_09615: PS417_09615 - glycosyl transferase family 1, at 2,082,746 to 2,083,936 _09615 PS417_09620: PS417_09620 - lipopolysaccharide biosynthesis protein, at 2,083,936 to 2,085,927 _09620 PS417_09625: PS417_09625 - sugar ABC transporter substrate-binding protein, at 2,085,942 to 2,086,718 _09625 PS417_09630: PS417_09630 - glycosyl transferase, at 2,086,748 to 2,087,659 _09630 PS417_09635: PS417_09635 - mannose-1-phosphate guanylyltransferase, at 2,087,661 to 2,089,121 _09635
Group Condition PS417_09615 PS417_09620 PS417_09625 PS417_09630 PS417_09635
solid stress 80% Methanol 2 mM; solid stress -2.4 -1.2 -1.9 -0.4 -0.7
supernatant control Vogels_fungal_media 0.1X -1.2 -1.0 -2.2 -0.9 -0.8
solid stress 80% Methanol 3 mM; solid stress -1.7 -0.8 -2.2 -0.5 -0.8
solid stress Fraxetin 2 mM; solid stress -1.5 -0.8 -1.1 -0.9 -0.9
solid stress Fraxetin 3 mM; solid stress -1.2 -1.0 -1.6 -0.9 -0.6
solid stress 80% Methanol 2 mM; solid stress -2.2 -0.8 -1.2 -0.3 -0.2
stress R2A with Fusaric 120 ug/mL -1.3 -0.9 -1.3 -0.7 -0.4
stress R2A with Fusaric 120 ug/mL -2.3 -0.7 -0.9 -0.1 -0.4
solid stress 80% Methanol 2 mM; solid stress -1.6 -0.6 -1.6 -0.3 -0.3
liquid stress Fraxetin 3 mM; liquid stress -1.0 -0.9 -0.8 -1.2 -0.4
solid stress Fraxetin 3 mM; solid stress -1.1 -1.0 -1.1 -0.4 -0.7
liquid stress Fraxetin 3 mM; liquid stress -1.0 -0.9 -0.8 -0.9 -0.5
stress R2A with Fusaric 120 ug/mL -1.7 -1.0 -0.9 +0.0 -0.5
solid stress Fraxetin 2 mM; solid stress -1.2 -0.9 -1.2 -0.4 -0.4
stress R2A with Fusaric 120 ug/mL -1.5 -0.9 -1.1 -0.1 -0.3
liquid stress Fraxetin 3 mM; liquid stress -0.9 -1.0 -1.0 -0.4 -0.6
liquid stress Fraxetin 2 mM; liquid stress -0.7 -0.6 -1.0 -0.8 -0.7
solid stress Fraxetin 2 mM; solid stress -1.0 -0.8 -0.9 -0.9 -0.3
stress R2A with Fusaric 120 ug/mL -1.4 -0.9 -1.1 -0.0 -0.4
solid stress 80% Methanol 0.5 mM; solid stress -1.2 -0.9 -0.6 -0.6 -0.4
solid stress Fraxetin 3 mM; solid stress -0.8 -0.8 -1.0 -0.3 -0.7
liquid stress Fraxetin 3 mM; liquid stress -0.9 -1.0 -0.9 -0.5 -0.4
solid stress Fraxetin 2 mM; solid stress -1.4 -0.5 -0.8 -0.7 -0.2
solid stress Scopoletin 0.5 mM; solid stress -1.7 -0.6 -0.8 -0.2 -0.2
solid stress Fraxetin 3 mM; solid stress -1.1 -0.7 -0.3 -0.6 -0.7
solid stress 80% Methanol 1 mM; solid stress -1.2 -0.8 -0.8 +0.3 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 +1.0 +0.9 +1.3 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.0 +0.4 +3.0 -0.1 +1.1
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +0.9 +1.6 +0.9 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.3 +1.2 +1.2 +1.1 +1.0
remove
PS417_09615
plot
remove
PS417_09620
plot
remove
PS417_09625
remove
PS417_09630
plot
remove
PS417_09635
plot