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Cofit
Protein
Homologs
Fitness for 5 genes in
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1881 and GFF1882 are separated by 2 nucleotides
GFF1882 and GFF1883 overlap by 4 nucleotides
GFF1883 and GFF1884 are separated by 10 nucleotides
GFF1884 and GFF1885 are separated by 14 nucleotides
GFF1881 - NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3), at 74,054 to 75,889
GFF1881
GFF1882 - NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3), at 75,892 to 76,194
GFF1882
GFF1883 - NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3), at 76,191 to 76,745
GFF1883
GFF1884 - NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3), at 76,756 to 77,298
GFF1884
GFF1885 - NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3), at 77,313 to 78,290
GFF1885
Group
Condition
GFF1881
GFF1882
GFF1883
GFF1884
GFF1885
phage
LB_plus_SM_buffer with Br60_phage 0.0000005 MOI
-4.0
-4.1
-4.2
-2.6
-3.9
phage
LB_plus_SM_buffer with Br60_phage 0.000005 MOI
-3.0
-2.5
-3.0
-2.6
-3.0
phage
LB_plus_SM_buffer with Br60_phage 0.00005 MOI
-2.0
-2.1
-2.4
-2.5
-2.6
phage
LB_plus_SM_buffer with ES18h1_phage 0.75 MOI
-1.8
-1.7
-2.3
-3.1
-2.0
phage
LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
-1.7
-2.0
-2.6
-2.0
-2.1
phage
LB_plus_SM_buffer with phi19h1_phage 0.01875 MOI
-1.7
-1.9
-1.6
-1.9
-1.7
lb_plus_sm_buffer
LB_plus_SM_buffer
-1.5
-1.6
-1.5
-2.2
-1.9
phage
LB_plus_SM_buffer with Ffm_phage 0.000001875 MOI
-2.0
-2.1
-1.9
-0.5
-2.0
phage
LB_plus_SM_buffer with 6C2_phage 0.25 MOI
-1.5
-1.6
-1.4
-2.0
-1.7
phage
LB_plus_SM_buffer with 6F2_phage 0.001875 MOI
-1.6
-1.8
-1.3
-1.9
-1.6
phage
LB_plus_SM_buffer with 6F2_phage 0.01875 MOI
-2.0
-1.4
-1.7
-1.5
-1.4
phage
LB_plus_SM_buffer with Br60_phage 0.0005 MOI
-2.1
-1.9
-1.6
-2.1
-0.1
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.0075 MOI
-1.1
-1.2
-1.7
-1.9
-1.9
micoeukaryotes
Dictyostellum sp.mixed culture-1
-1.3
-1.4
-1.3
-1.5
-1.7
phage
LB_plus_SM_buffer with Ffm_phage 0.01875 MOI
-1.5
-1.2
-1.9
-0.9
-1.6
micoeukaryotes
Dictyostellum sp.mixed culture-2
-1.3
-1.1
-1.1
-2.1
-1.5
phage
LB_plus_SM_buffer with 6F2_phage 0.0001875 MOI
-1.4
-1.3
-1.3
-1.7
-1.3
phage
LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
-1.4
-1.1
-1.0
-2.1
-1.2
phage
LB_plus_SM_buffer with 6D2_phage 0.75 MOI
-1.4
-1.6
-1.3
-1.1
-1.4
micoeukaryotes
Acanthamoeba sp., muxed culture-2
-1.1
-1.4
-1.3
-1.6
-1.3
lb_plus_sm_buffer
LB_plus_SM_buffer
-1.5
-1.2
-1.3
-1.5
-1.1
phage
LB_plus_SM_buffer with Ffm_phage 0.0001875 MOI
-1.4
-1.3
-1.5
-0.8
-1.5
phage
6H2_phage 10 MOI; agar plate assay
-1.8
-0.9
-1.3
-1.4
-1.1
phage
LB_plus_SM_buffer with 6H2_phage 0.5 MOI
-1.4
-1.3
-1.3
-1.1
-1.5
micoeukaryotes
C.elegans, mixed culture-2
-1.3
-1.4
-0.9
-1.4
-1.6
micoeukaryotes
C.elegans, mixed culture-1
-1.3
-1.1
-1.0
-1.7
-1.3
phage
LB_plus_SM_buffer with Ffm_phage 0.001875 MOI
-1.5
-1.2
-1.7
-0.4
-1.5
phage
LB_plus_SM_buffer with phi19h1_phage 0.001875 MOI
-1.5
-1.3
-1.0
-0.8
-1.4
micoeukaryotes
Acanthamoeba sp., muxed culture-1
-1.0
-1.5
-1.4
-0.9
-1.2
phage
LB_plus_SM_buffer with Ffm_phage 0.1875 MOI
-1.1
-1.1
-1.0
-1.3
-1.1
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