Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF1877 and GFF1878 are separated by 33 nucleotidesGFF1878 and GFF1879 are separated by 31 nucleotidesGFF1879 and GFF1880 are separated by 279 nucleotidesGFF1880 and GFF1881 overlap by 4 nucleotides GFF1877 - ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines), at 550,497 to 551,279 GFF1877 GFF1878 - Bll6165 protein, at 551,313 to 551,723 GFF1878 GFF1879 - dicarboxylic acid transporter PcaT, at 551,755 to 553,101 GFF1879 GFF1880 - Previously called glutamate synthase [NADPH] small chain, at 553,381 to 555,180 GFF1880 GFF1881 - 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, gamma subunit (EC 1.2.7.-) / 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, alpha subunit (EC 1.2.7.-), at 555,177 to 557,003 GFF1881
Group Condition GFF1877 GFF1878 GFF1879 GFF1880 GFF1881
complex community Community=arabino-guar; Passage=4 N.D. -0.7 +0.0 -0.5 -0.2
complex community Community=arabino-guar; Passage=4 N.D. -0.4 +0.1 -0.2 -0.4
complex community Community=Kojac gum; Passage=4 N.D. -0.2 -0.2 -0.3 -0.1
complex community Community=Locust bean gum; Passage=4 N.D. -1.3 +0.0 +0.4 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL N.D. -0.6 -0.1 -0.0 +0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL N.D. -0.3 +0.0 +0.1 -0.2
phage phage_bap4 N.D. -0.4 +0.0 +0.0 -0.1
phage phage_bap4 N.D. -0.5 +0.0 +0.2 -0.1
complex community Community=Locust bean gum; Passage=4 N.D. -0.9 -0.3 +0.4 +0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. -0.3 -0.0 +0.1 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL N.D. -0.3 -0.1 +0.2 +0.0
complex community Community=Kojac gum; Passage=1 N.D. -0.3 -0.0 +0.2 -0.1
phage phage_bap4 N.D. -0.4 +0.0 -0.0 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. -0.2 -0.2 +0.2 +0.0
phage phage_bap4 N.D. -0.3 -0.0 +0.2 +0.1
complex community Community=arabino-guar; Passage=4 N.D. -0.5 +0.2 -0.3 +0.5
no phage control no phage control N.D. -0.3 +0.1 +0.2 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. -0.2 -0.1 +0.2 +0.1
phage phage_bap4 N.D. -0.2 +0.1 +0.3 -0.0
vitamin M9 with Supernatant from Cyptococcus N.D. -0.3 -0.1 +0.3 +0.2
vitamin M9 with Supernatant from Cyptococcus N.D. +0.1 -0.2 +0.3 +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. -0.1 -0.1 +0.4 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL N.D. -0.1 +0.1 +0.2 +0.2
complex community Community=Locust bean gum; Passage=4 N.D. -0.5 +0.0 +0.8 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. +0.5 -0.1 +0.2 +0.1
complex community Community=guar; Passage=4 N.D. +0.3 -0.2 +0.2 +0.3
complex community Community=guar; Passage=4 N.D. -0.1 +0.2 +0.9 +0.2
complex community Community=Locust bean gum; Passage=4 N.D. +0.9 +0.2 -0.2 +0.2
complex community Community=guar; Passage=4 N.D. +0.4 +0.1 +0.5 +0.1
complex community Community=guar; Passage=4 N.D. +0.6 +0.0 +0.7 +0.3
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