Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_09540	PS417_09545	PS417_09550	PS417_09560	PS417_09565
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.5	-0.9	N.D.	-0.4	-0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.6	-0.9	N.D.	-0.3	-0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.0	-0.7	N.D.	+0.0	+0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.7	-0.7	N.D.	-0.1	+0.2
carbon source	L-Valine (C)	+0.0	-1.3	N.D.	-0.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	-1.4	N.D.	-0.0	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-1.3	N.D.	-0.1	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.0	-0.6	N.D.	+0.1	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	-1.2	N.D.	+0.2	-0.3
phage	P. simiae Grant Run MOI 10	-0.1	-1.3	N.D.	+0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.8	N.D.	-0.0	+0.0
phage	P. simiae Grant Run MOI 0.1	+0.0	-1.3	N.D.	+0.2	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	-1.2	N.D.	-0.0	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.2	-1.2	N.D.	+0.3	-0.2
soil	soil sample 5; outgrowth in LB	-0.5	-0.9	N.D.	+0.2	+0.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.2	-1.0	N.D.	+0.4	-0.0
stress	Gentamicin 0.008 mg/ml	+0.3	-1.2	N.D.	+0.2	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	-0.8	N.D.	-0.1	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.4	N.D.	-0.5	-0.1
stress	Cisplatin 0.01 mg/ml	+0.2	+0.3	N.D.	+0.2	-1.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.3	-0.7	N.D.	+0.5	+0.7
root	root sample 6; outgrowth in LB	-0.2	-0.5	N.D.	+0.4	+0.5
liquid stress	80% Methanol 3 mM; liquid stress	+0.2	+0.8	N.D.	-0.1	-0.2
seeds	Growth on radish seeds for 72 hours	-0.3	+1.4	N.D.	-0.1	-0.3
phage	JP1 MOI 10	+0.2	+0.9	N.D.	-0.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.8	N.D.	+0.4	+0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	+1.1	N.D.	+0.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	+0.6	N.D.	+0.3	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.0	+1.5	N.D.	+0.4	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+1.6	N.D.	+0.3	+0.1