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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1869 and GFF1870 overlap by 4 nucleotides
GFF1870 and GFF1871 are separated by 13 nucleotides
GFF1871 and GFF1872 are separated by 36 nucleotides
GFF1872 and GFF1873 are separated by 4 nucleotides
GFF1869 - no description, at 543,775 to 544,248
GFF1869
GFF1870 - Coenzyme A transferase, at 544,245 to 545,846
GFF1870
GFF1871 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.8.1), at 545,860 to 547,002
GFF1871
GFF1872 - no description, at 547,039 to 547,431
GFF1872
GFF1873 - KEGG: LacI family transcriptional regulator, at 547,436 to 548,446
GFF1873
Group
Condition
GFF1869
GFF1870
GFF1871
GFF1872
GFF1873
complex community
Community=Locust bean gum; Passage=4
-3.0
+0.5
-0.3
+0.0
-1.7
complex community
Community=arabino-guar; Passage=4
-0.9
+0.5
-1.7
+0.0
-1.5
vitamin
M9 with calcium pantothenate 10 mg/mL
-1.0
+0.1
-0.9
-0.0
-0.6
complex community
Community=guar; Passage=4
-0.5
-0.2
-0.0
-0.4
-1.3
complex community
Community=guar; Passage=4
+0.0
+0.2
-1.2
-0.2
-1.1
vitamin
M9 with Supernatant from Cyptococcus
-1.1
+0.1
-0.4
-0.0
-0.5
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.5
-0.3
-0.6
-0.1
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL
-1.1
-0.1
-0.5
-0.3
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.4
-0.1
-0.5
-0.1
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.9
-0.3
-0.3
+0.0
-0.1
complex community
Community=Locust bean gum; Passage=4
-1.0
+0.7
+0.1
-0.8
-0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.8
-0.4
-0.0
+0.2
-0.4
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.2
-0.1
-0.4
-0.3
-0.7
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.0
-0.4
-0.6
+0.1
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.9
-0.0
+0.1
+0.2
-0.6
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.4
-0.4
-0.1
+0.1
-0.3
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.0
+0.1
-0.3
-0.1
-0.8
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.2
-0.3
-0.4
-0.1
-0.4
complex community
Community=Kojac gum; Passage=1
-0.3
-0.4
-0.3
-0.2
+0.2
complex community
Community=guar; Passage=4
-0.1
-0.6
-0.9
+0.2
+0.6
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.4
-0.6
-0.2
-0.2
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.2
-0.4
-0.6
+0.1
+0.1
complex community
Community=arabino-guar; Passage=4
+0.4
+0.2
+0.4
-0.4
-1.2
phage
phage_bap4
-0.3
+0.2
-0.3
-0.2
+0.2
complex community
Community=arabino-guar; Passage=4
+0.4
-0.1
-0.2
+0.3
-0.8
phage
phage_bap4
-0.4
-0.5
+0.2
+0.0
+0.6
no phage control
no phage control
+0.2
+0.2
-0.4
+0.0
+0.5
complex community
Community=Locust bean gum; Passage=4
+0.7
+0.6
-0.1
-0.5
-0.0
phage
phage_bap4
-0.2
+0.3
+0.4
+0.0
+0.3
phage
phage_bap4
+0.8
+0.1
+0.1
+0.1
+0.3
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