Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_09485	PS417_09490	PS417_09495	PS417_09500	PS417_09505
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.4	-0.0	-0.2	-0.1	-1.1
carbon source	L-Valine (C)	-0.2	-0.2	-0.3	-0.3	-0.6
soil	soil sample 4; outgrowth in LB	-0.1	+0.1	-0.5	-0.4	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	-0.2	+0.2	-0.3	-0.6
soil	soil sample 3; outgrowth in LB	-0.3	+0.2	-0.5	-0.4	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.2	+0.1	-1.0	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-0.2	+0.2	+0.1	-0.9
soil	soil sample 2; outgrowth in LB	+0.4	-0.3	-0.1	+0.0	-0.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	+0.2	-0.2	-0.0	-1.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	-0.2	-0.3	+0.4	-0.3
phage	P. simiae ORA MOI 0.1	-0.2	-0.4	-0.3	+0.2	+0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.2	-0.3	+0.5	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+0.6	-0.4	+0.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.2	+0.7	+0.4	-0.6
seeds	Growth on radish seeds for 72 hours	-0.1	+0.3	-0.5	-0.1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.3	-0.3	-0.3	+1.0
stress	Gentamicin 0.008 mg/ml	+0.5	+0.4	-0.0	+0.1	-0.6
carbon source	octanoate (C)	-0.1	-0.1	+0.1	-0.1	+1.1
agar plate interaction control	Taped volatile agar plate with no fungus	-0.1	-0.2	+0.3	+0.5	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.1	+0.5	-0.3	+0.7
phage	P. simiae Grant Run MOI 10	-0.2	-0.1	+0.3	+0.3	+0.8
phage	P. simiae ORA MOI 1	-0.0	-0.2	+0.3	+0.1	+1.0
carbon source	octanoate (C)	+0.1	-0.2	+0.1	+0.1	+1.1
stress	Nalidixic 0.015 mg/ml	+0.4	+0.1	-0.0	+0.2	+0.8
stress	Doxycycline hyclate 0.001 mg/ml	+0.0	+0.1	-0.4	+0.4	+1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.1	+0.7	+0.3	+0.7
phage	P. simiae OR Antrim MOI 10	+0.2	+0.1	+0.4	+0.4	+0.6
stress	Tetracycline 0.001 mg/ml	+0.2	+0.1	+0.1	+0.2	+1.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.5	+0.9	-0.0	+0.0
stress	Neomycin 0.04 mg/ml	+0.0	+0.2	+0.3	+0.2	+2.7