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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1856 and GFF1857 are separated by 92 nucleotides
GFF1857 and GFF1858 overlap by 4 nucleotides
GFF1858 and GFF1859 overlap by 4 nucleotides
GFF1859 and GFF1860 are separated by 12 nucleotides
GFF1856 - FIG00636408: hypothetical protein, at 531,353 to 531,745
GFF1856
GFF1857 - FIG00553873: hypothetical protein, at 531,838 to 533,118
GFF1857
GFF1858 - ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines), at 533,115 to 533,879
GFF1858
GFF1859 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 533,876 to 534,547
GFF1859
GFF1860 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 534,560 to 535,327
GFF1860
Group
Condition
GFF1856
GFF1857
GFF1858
GFF1859
GFF1860
vitamin
M9 with calcium pantothenate 10 mg/mL
-1.0
+0.1
-2.0
-0.2
+0.2
complex community
Community=arabino-guar; Passage=4
-1.7
-0.2
-0.6
+0.1
-0.2
complex community
Community=arabino-guar; Passage=4
-0.4
-0.2
-0.9
-0.3
-0.4
complex community
Community=Locust bean gum; Passage=4
+0.3
+0.2
-2.0
-0.5
+0.1
complex community
Community=Locust bean gum; Passage=4
-0.2
-0.5
-1.2
+0.5
-0.2
phage
phage_bap4
-0.3
-0.1
-1.2
+0.1
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.8
-0.1
-0.7
-0.1
-0.0
no phage control
no phage control
-0.5
+0.1
-1.2
+0.1
+0.0
phage
phage_bap4
-0.5
-0.1
-0.8
+0.0
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.4
+0.1
-0.8
-0.2
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.5
-0.0
-0.7
-0.1
+0.0
vitamin
M9 with Supernatant from Cyptococcus
-0.6
+0.5
-1.1
-0.0
-0.2
no phage control
no phage control
-0.3
-0.1
-1.0
+0.1
+0.0
complex community
Community=Kojac gum; Passage=1
-0.3
-0.2
-0.8
+0.1
-0.0
phage
phage_bap4
+0.2
-0.1
-1.4
+0.1
+0.0
complex community
Community=arabino-guar; Passage=4
+0.6
-0.8
-0.2
-0.0
-0.7
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.5
+0.4
-0.7
-0.2
+0.0
complex community
Community=arabino-guar; Passage=4
-1.0
-0.6
+0.8
+0.3
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-1.1
-0.0
+0.7
-0.1
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-1.1
+0.3
+0.4
-0.1
-0.1
phage
phage_bap4
-0.5
+0.3
-0.5
+0.2
+0.1
complex community
Community=guar; Passage=4
-0.9
-0.2
+0.7
-0.1
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.9
+0.2
+0.8
-0.0
-0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.4
-0.3
+0.3
-0.3
-0.2
complex community
Community=guar; Passage=4
-0.6
-0.5
+0.7
+0.2
+0.1
complex community
Community=guar; Passage=4
+0.8
-0.6
-0.3
+0.3
-0.1
complex community
Community=Kojac gum; Passage=4
+0.6
+0.5
-0.7
-0.1
-0.1
complex community
Community=Locust bean gum; Passage=4
-0.3
-0.0
+1.2
-0.2
-0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.6
+0.3
+0.5
+0.1
+0.2
vitamin
M9 with Supernatant from Cyptococcus
-0.4
+0.0
+0.9
-0.0
+0.1
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