Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_09420	PS417_09425	PS417_09430	PS417_09435	PS417_09440
root	root sample 6; outgrowth in LB	-1.3	+0.1	-0.4	-0.3	-2.1
solid stress	Fraxetin 2 mM; solid stress	-3.2	+0.0	+0.4	-0.2	-0.5
phage	JP1 MOI 0.1	+0.1	+0.1	-0.3	-0.8	-2.2
seeds	Growth on radish seeds for 72 hours	-0.4	+0.0	-0.5	-0.7	-1.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-1.4	-0.2	-0.3	-0.2	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	-0.2	-0.5	+0.1	-1.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.5	+0.0	-0.4	-0.0	-0.6
nophagecontrol	Only library	-2.0	-0.2	-0.3	-0.3	+0.4
liquid stress	Fraxetin 2 mM; liquid stress	-0.8	-0.1	-0.5	+0.1	-0.9
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-1.9	-0.2	+0.0	-0.0	+0.2
phage	P. simiae Grant Run MOI 0.1	-1.3	+0.1	-0.0	+0.4	-1.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.7	+0.5	+0.0	-0.3	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.7	-0.0	+0.4	-0.5	-0.7
soil	soil sample 8; outgrowth in LB	+0.8	-0.1	-0.2	-0.5	-1.5
seeds	Growth on radish seeds for 24 hours	-2.2	+0.1	+0.4	-0.1	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.5	+0.1	-0.3	+0.1	+0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.5	+0.1	+0.2	-0.1	-1.4
soil	soil sample 7; outgrowth in LB	+0.8	-0.4	-0.2	-0.5	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	+0.1	-0.5	+1.0	-0.0
phage	P. simiae OR Antrim MOI 0.1	+1.2	+0.2	-0.2	-0.8	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7	-0.1	+0.6	+0.2	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.8	+0.3	+0.3	-0.2	-0.8
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.7	+0.2	+0.5	+0.1	-0.9
seeds	Growth on radish seeds for 72 hours	+0.9	-0.5	-0.5	+0.9	+0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	+0.1	-0.2	+0.8	+0.8
motility	inner cut, LB soft agar motility assay	+0.9	-0.1	+0.2	-0.5	+0.6
agar plate interaction control	Taped volatile agar plate with no fungus	+1.0	+0.2	-0.4	-0.1	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.2	+0.2	+0.0	+0.4	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.1	-0.3	+1.3	-0.2
nitrogen source	Urea (N)	+0.1	+0.1	-0.2	+0.2	+1.7