Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_09400	PS417_09405	PS417_09410	PS417_09415	PS417_09420
solid stress	Fraxetin 2 mM; solid stress	N.D.	N.D.	-0.1	+0.1	-3.2
seeds	Growth on radish seeds for 24 hours	N.D.	N.D.	-0.2	-0.4	-2.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.3	-0.5	-1.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	N.D.	+0.1	-0.4	-1.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.1	-0.2	-1.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.1	+0.1	-1.7
nophagecontrol	Only library	N.D.	N.D.	+0.2	+0.2	-2.0
ecofab	LB in EcoFAB_3.5mL	N.D.	N.D.	+0.0	-0.1	-1.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	N.D.	N.D.	+0.2	+0.2	-1.9
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	N.D.	N.D.	+0.1	-0.2	-1.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.1	+0.0	-1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	-0.2	-0.1	-1.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.3	+0.1	-1.5
phage	P. simiae Grant Run MOI 0.1	N.D.	N.D.	+0.2	+0.0	-1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.2	-0.1	-1.1
root	root sample 6; outgrowth in LB	N.D.	N.D.	+0.3	+0.0	-1.3
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	N.D.	+0.3	+0.0	-1.3
motility_chemotaxis	Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.2	+0.2	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	N.D.	-0.4	+0.5	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	-0.7	-0.4	+1.2
rhizosphere	rhizosphere sample 8; outgrowth in LB	N.D.	N.D.	+0.3	-0.7	+0.8
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	N.D.	-0.3	-0.3	+1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.5	-0.6	+0.5
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	-0.4	+0.3	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.1	-0.5	+1.1
stress	Gentamicin 0.008 mg/ml	N.D.	N.D.	-0.3	+0.2	+0.9
phage	P. simiae OR Antrim MOI 0.1	N.D.	N.D.	+0.0	-0.3	+1.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	N.D.	-0.2	-0.2	+1.3
soil	soil sample 4; outgrowth in LB	N.D.	N.D.	+0.1	+0.2	+1.1
motility	inner cut, LB soft agar motility assay	N.D.	N.D.	+0.3	+0.2	+0.9