Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_09395 and PS417_09400 overlap by 4 nucleotidesPS417_09400 and PS417_09405 overlap by 4 nucleotidesPS417_09405 and PS417_09410 are separated by 290 nucleotidesPS417_09410 and PS417_09415 overlap by 4 nucleotides PS417_09395: PS417_09395 - hypothetical protein, at 2,036,639 to 2,036,968 _09395 PS417_09400: PS417_09400 - thiamine pyrophosphate-binding protein, at 2,036,965 to 2,037,501 _09400 PS417_09405: PS417_09405 - peptidase, at 2,037,498 to 2,038,700 _09405 PS417_09410: PS417_09410 - isopropylmalate isomerase, at 2,038,991 to 2,040,409 _09410 PS417_09415: PS417_09415 - 3-isopropylmalate dehydratase, at 2,040,406 to 2,041,020 _09415
Group Condition PS417_09395 PS417_09400 PS417_09405 PS417_09410 PS417_09415
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -0.7 -0.4
soil soil sample 2; outgrowth in LB N.D. N.D. N.D. -0.2 -0.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.3 -0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.2 -0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.3 -0.4
seeds Growth on radish seeds for 24 hours N.D. N.D. N.D. -0.2 -0.4
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. N.D. N.D. +0.3 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. +0.2 -0.6
phage P. simiae Grant Run MOI 0.1 N.D. N.D. N.D. +0.2 -0.4
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.4 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -0.4 +0.3
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -0.4 +0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. +0.5 -0.6
solid stress Fraxetin 1 mM; solid stress N.D. N.D. N.D. -0.3 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -0.4 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. -0.4 +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -0.4 +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -0.3 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -0.3 +0.4
phage JP1 MOI 1 N.D. N.D. N.D. -0.4 +0.5
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.4 +0.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. +0.8 -0.4
phage JP1 MOI 0.1 N.D. N.D. N.D. +0.5 -0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. N.D. N.D. +0.4 +0.2
solid stress 80% Methanol 0.5 mM; solid stress N.D. N.D. N.D. +0.2 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. +0.2 +0.4
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. N.D. N.D. +0.3 +0.4
seeds Growth on radish seeds for 72 hours N.D. N.D. N.D. +0.2 +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. +0.3 +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. +0.4 +0.7
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PS417_09395
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PS417_09400
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PS417_09410
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PS417_09415
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