Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_09365 and PS417_09370 are separated by 71 nucleotidesPS417_09370 and PS417_09375 overlap by 1 nucleotidesPS417_09375 and PS417_09380 overlap by 4 nucleotidesPS417_09380 and PS417_09385 overlap by 4 nucleotides PS417_09365: PS417_09365 - MFS transporter, at 2,031,804 to 2,032,517 _09365 PS417_09370: PS417_09370 - metal ABC transporter substrate-binding protein, at 2,032,589 to 2,033,503 _09370 PS417_09375: PS417_09375 - zinc ABC transporter permease, at 2,033,503 to 2,034,402 _09375 PS417_09380: PS417_09380 - manganese ABC transporter ATP-binding protein, at 2,034,399 to 2,035,145 _09380 PS417_09385: PS417_09385 - ABC transporter substrate-binding protein, at 2,035,142 to 2,036,062 _09385
Group Condition PS417_09365 PS417_09370 PS417_09375 PS417_09380 PS417_09385
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 N.D. N.D. N.D. N.D.
solid stress Fraxetin 3 mM; solid stress -0.6 N.D. N.D. N.D. N.D.
motility inner cut, LB soft agar motility assay -0.6 N.D. N.D. N.D. N.D.
seeds Growth on radish seeds for 72 hours -0.5 N.D. N.D. N.D. N.D.
stress Phosphomycin 0.001 mg/ml -0.5 N.D. N.D. N.D. N.D.
phage P. simiae ORA MOI 0.1 -0.5 N.D. N.D. N.D. N.D.
soil soil sample 5; outgrowth in LB -0.5 N.D. N.D. N.D. N.D.
stress Gentamicin 0.008 mg/ml -0.5 N.D. N.D. N.D. N.D.
agar plate interaction control Taped volatile agar plate with no fungus -0.5 N.D. N.D. N.D. N.D.
carbon source L-Valine (C) -0.5 N.D. N.D. N.D. N.D.
soil soil sample 2; outgrowth in LB -0.5 N.D. N.D. N.D. N.D.
soil soil sample 6; outgrowth in LB -0.4 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.4 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 N.D. N.D. N.D. N.D.
seeds Growth on radish seeds for 72 hours -0.4 N.D. N.D. N.D. N.D.
stress Nalidixic 0.025 mg/ml -0.4 N.D. N.D. N.D. N.D.
solid stress Fraxetin 3 mM; solid stress -0.4 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 N.D. N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.4 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.4 N.D. N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.4 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 N.D. N.D. N.D. N.D.
stress 6-methoxy-2(3H)-benzoxazolone 1.2 mM +0.4 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.4 N.D. N.D. N.D. N.D.
phage P. simiae ORA MOI 0.1 +0.5 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 N.D. N.D. N.D. N.D.
soil soil sample 7; outgrowth in LB +0.6 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 N.D. N.D. N.D. N.D.
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