Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_09355 and PS417_09360 are separated by 179 nucleotidesPS417_09360 and PS417_09365 are separated by 347 nucleotidesPS417_09365 and PS417_09370 are separated by 71 nucleotidesPS417_09370 and PS417_09375 overlap by 1 nucleotides PS417_09355: PS417_09355 - hypothetical protein, at 2,029,394 to 2,030,200 _09355 PS417_09360: PS417_09360 - ABC transporter substrate-binding protein, at 2,030,380 to 2,031,456 _09360 PS417_09365: PS417_09365 - MFS transporter, at 2,031,804 to 2,032,517 _09365 PS417_09370: PS417_09370 - metal ABC transporter substrate-binding protein, at 2,032,589 to 2,033,503 _09370 PS417_09375: PS417_09375 - zinc ABC transporter permease, at 2,033,503 to 2,034,402 _09375
Group Condition PS417_09355 PS417_09360 PS417_09365 PS417_09370 PS417_09375
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.5 -1.1 N.D. N.D.
seeds Growth on radish seeds for 72 hours N.D. -0.9 -0.3 N.D. N.D.
soil soil sample 2; outgrowth in LB N.D. -0.7 -0.5 N.D. N.D.
phage P. simiae ORA MOI 0.1 N.D. -0.5 -0.5 N.D. N.D.
motility inner cut, LB soft agar motility assay N.D. -0.3 -0.6 N.D. N.D.
phage FRSphage N.D. -0.8 -0.1 N.D. N.D.
phage JP1 MOI 0.1 N.D. -0.6 -0.3 N.D. N.D.
supernatant control Vogels_fungal_media 0.1X N.D. -0.4 -0.3 N.D. N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -0.5 -0.3 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.5 -0.3 N.D. N.D.
soil soil sample 3; outgrowth in LB N.D. -0.5 -0.2 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. -0.3 -0.4 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.7 +0.4 N.D. N.D.
carbon source L-Valine (C) N.D. +0.3 -0.5 N.D. N.D.
phage P. simiae OR Antrim MOI 10 N.D. -0.4 +0.3 N.D. N.D.
solid stress Fraxetin 3 mM; solid stress N.D. +0.4 -0.6 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +0.3 -0.4 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.3 -0.3 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. -0.3 +0.4 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.4 -0.4 N.D. N.D.
stress Gentamicin 0.008 mg/ml N.D. +0.6 -0.5 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.4 -0.3 N.D. N.D.
no phage control no phage control N.D. -0.3 +0.5 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.6 -0.1 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. +0.2 +0.4 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.1 +0.8 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.3 +0.5 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. +0.5 +0.4 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.5 +0.5 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. +0.9 +0.1 N.D. N.D.
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