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Fitness for 5 genes in
Pseudomonas simiae WCS417
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500 nt
PS417_00915 and PS417_00920 are separated by 166 nucleotides
PS417_00920 and PS417_00925 are separated by 211 nucleotides
PS417_00925 and PS417_00930 are separated by 73 nucleotides
PS417_00930 and PS417_00935 are separated by 158 nucleotides
PS417_00915: PS417_00915 - aminotransferase, at 204,672 to 205,856
_00915
PS417_00920: PS417_00920 - diguanylate cyclase, at 206,023 to 207,936
_00920
PS417_00925: PS417_00925 - hypothetical protein, at 208,148 to 208,330
_00925
PS417_00930: PS417_00930 - ABC transporter permease, at 208,404 to 209,414
_00930
PS417_00935: PS417_00935 - sulfate ABC transporter permease, at 209,573 to 210,391
_00935
Group
Condition
PS417
_00915
PS417
_00920
PS417
_00925
PS417
_00930
PS417
_00935
soil
soil sample 5; outgrowth in LB
-0.9
-0.1
-3.0
-0.0
+0.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+0.7
-0.5
-1.9
+0.2
-0.4
liquid stress
Scopoletin 2 mM; liquid stress
+1.1
-2.3
-0.5
+0.0
-0.1
liquid stress
Fraxetin 2 mM; liquid stress
+1.3
-2.4
-0.6
-0.2
+0.1
liquid stress
80% Methanol 3 mM; liquid stress
+1.6
-2.4
-0.8
-0.1
-0.1
liquid stress
80% Methanol 2 mM; liquid stress
+1.2
-2.4
-0.2
-0.1
-0.1
liquid stress
Fraxetin 2 mM; liquid stress
+1.4
-1.9
-0.6
+0.0
-0.4
liquid stress
Scopoletin 2 mM; liquid stress
+1.4
-2.3
-0.2
+0.0
-0.2
liquid stress
80% Methanol 2 mM; liquid stress
+1.2
-1.8
-0.7
-0.1
+0.0
phage
P. simiae ORA MOI 0.1
+0.9
-0.7
-1.9
+0.1
+0.2
liquid stress
80% Methanol 3 mM; liquid stress
+1.5
-2.3
-0.6
+0.1
+0.0
liquid stress
Fraxetin 2 mM; liquid stress
+1.0
-2.1
-0.3
+0.1
-0.1
liquid stress
Fraxetin 2 mM; liquid stress
+1.2
-2.0
-0.2
-0.2
-0.0
liquid stress
80% Methanol 2 mM; liquid stress
+1.2
-2.1
-0.1
-0.1
+0.1
liquid stress
Scopoletin 3 mM; liquid stress
+1.3
-1.7
-0.3
+0.2
-0.3
liquid stress
Scopoletin 3 mM; liquid stress
+1.3
-1.9
-0.2
-0.2
+0.0
liquid stress
Scopoletin 3 mM; liquid stress
+1.2
-1.7
-0.9
+0.4
+0.1
liquid stress
80% Methanol 2 mM; liquid stress
+1.5
-2.2
-0.0
+0.0
-0.1
liquid stress
80% Methanol 3 mM; liquid stress
+1.3
-2.1
+0.1
+0.1
-0.0
liquid stress
Scopoletin 2 mM; liquid stress
+1.5
-1.6
-0.3
-0.0
-0.1
liquid stress
Scopoletin 3 mM; liquid stress
+1.8
-2.0
-0.0
-0.0
-0.2
phage
JP1 MOI 10
+1.2
-0.8
-0.9
-0.6
+0.9
phage
P. simiae Grant Run MOI 10
+1.7
-0.4
-1.2
-0.0
-0.3
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+0.4
+1.8
-1.7
-0.7
+0.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+1.5
-0.5
-1.3
+0.1
+0.1
phage
P. simiae Grant Run MOI 10
+1.2
-1.4
-0.3
+0.1
+0.6
phage
JP1 MOI 0.1
+1.5
-0.2
+1.3
-0.2
-0.3
in planta
Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
+1.5
+0.7
+0.9
-0.1
-0.3
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+0.4
+2.0
+0.9
+0.2
+0.0
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-0.3
+3.2
+0.7
+0.1
+0.1
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