Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_00915 and PS417_00920 are separated by 166 nucleotidesPS417_00920 and PS417_00925 are separated by 211 nucleotidesPS417_00925 and PS417_00930 are separated by 73 nucleotidesPS417_00930 and PS417_00935 are separated by 158 nucleotides PS417_00915: PS417_00915 - aminotransferase, at 204,672 to 205,856 _00915 PS417_00920: PS417_00920 - diguanylate cyclase, at 206,023 to 207,936 _00920 PS417_00925: PS417_00925 - hypothetical protein, at 208,148 to 208,330 _00925 PS417_00930: PS417_00930 - ABC transporter permease, at 208,404 to 209,414 _00930 PS417_00935: PS417_00935 - sulfate ABC transporter permease, at 209,573 to 210,391 _00935
Group Condition PS417_00915 PS417_00920 PS417_00925 PS417_00930 PS417_00935
soil soil sample 5; outgrowth in LB -0.9 -0.1 -3.0 -0.0 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 -0.5 -1.9 +0.2 -0.4
liquid stress Scopoletin 2 mM; liquid stress +1.1 -2.3 -0.5 +0.0 -0.1
liquid stress Fraxetin 2 mM; liquid stress +1.3 -2.4 -0.6 -0.2 +0.1
liquid stress 80% Methanol 3 mM; liquid stress +1.6 -2.4 -0.8 -0.1 -0.1
liquid stress 80% Methanol 2 mM; liquid stress +1.2 -2.4 -0.2 -0.1 -0.1
liquid stress Fraxetin 2 mM; liquid stress +1.4 -1.9 -0.6 +0.0 -0.4
liquid stress Scopoletin 2 mM; liquid stress +1.4 -2.3 -0.2 +0.0 -0.2
liquid stress 80% Methanol 2 mM; liquid stress +1.2 -1.8 -0.7 -0.1 +0.0
phage P. simiae ORA MOI 0.1 +0.9 -0.7 -1.9 +0.1 +0.2
liquid stress 80% Methanol 3 mM; liquid stress +1.5 -2.3 -0.6 +0.1 +0.0
liquid stress Fraxetin 2 mM; liquid stress +1.0 -2.1 -0.3 +0.1 -0.1
liquid stress Fraxetin 2 mM; liquid stress +1.2 -2.0 -0.2 -0.2 -0.0
liquid stress 80% Methanol 2 mM; liquid stress +1.2 -2.1 -0.1 -0.1 +0.1
liquid stress Scopoletin 3 mM; liquid stress +1.3 -1.7 -0.3 +0.2 -0.3
liquid stress Scopoletin 3 mM; liquid stress +1.3 -1.9 -0.2 -0.2 +0.0
liquid stress Scopoletin 3 mM; liquid stress +1.2 -1.7 -0.9 +0.4 +0.1
liquid stress 80% Methanol 2 mM; liquid stress +1.5 -2.2 -0.0 +0.0 -0.1
liquid stress 80% Methanol 3 mM; liquid stress +1.3 -2.1 +0.1 +0.1 -0.0
liquid stress Scopoletin 2 mM; liquid stress +1.5 -1.6 -0.3 -0.0 -0.1
liquid stress Scopoletin 3 mM; liquid stress +1.8 -2.0 -0.0 -0.0 -0.2
phage JP1 MOI 10 +1.2 -0.8 -0.9 -0.6 +0.9
phage P. simiae Grant Run MOI 10 +1.7 -0.4 -1.2 -0.0 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +1.8 -1.7 -0.7 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.5 -0.5 -1.3 +0.1 +0.1
phage P. simiae Grant Run MOI 10 +1.2 -1.4 -0.3 +0.1 +0.6
phage JP1 MOI 0.1 +1.5 -0.2 +1.3 -0.2 -0.3
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.5 +0.7 +0.9 -0.1 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +2.0 +0.9 +0.2 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +3.2 +0.7 +0.1 +0.1
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