Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_09345	PS417_09350	PS417_09355	PS417_09360	PS417_09365
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.1	N.D.	-0.5	-1.1
phage	JP1 MOI 0.1	-0.5	-0.1	N.D.	-0.6	-0.3
soil	soil sample 3; outgrowth in LB	-0.3	-0.2	N.D.	-0.5	-0.2
soil	soil sample 2; outgrowth in LB	-0.2	+0.1	N.D.	-0.7	-0.5
motility	inner cut, LB soft agar motility assay	-0.2	+0.1	N.D.	-0.3	-0.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.2	-0.4	N.D.	-0.5	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.1	N.D.	-0.7	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.3	N.D.	-0.5	-0.3
supernatant control	Vogels_fungal_media 0.1X	+0.2	-0.2	N.D.	-0.4	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	-0.6	N.D.	+0.3	-0.1
seeds	Growth on radish seeds for 72 hours	-0.1	+0.7	N.D.	-0.9	-0.3
phage	P. simiae ORA MOI 0.1	+0.2	+0.2	N.D.	-0.5	-0.5
seeds	Growth on radish seeds for 72 hours	+0.4	-0.3	N.D.	-0.2	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	+0.0	N.D.	+0.3	-0.4
solid stress	Fraxetin 3 mM; solid stress	-0.3	+0.2	N.D.	+0.4	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.5	+0.1	N.D.	-0.3	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.2	N.D.	+0.3	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.3	-0.1	N.D.	-0.3	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.5	+0.1	N.D.	+0.2	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.4	N.D.	+0.4	-0.1
stress	Gentamicin 0.008 mg/ml	+0.3	-0.1	N.D.	+0.6	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.2	-0.2	N.D.	+0.9	+0.1
carbon source	L-Valine (C)	+0.4	-0.2	N.D.	+0.5	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	+0.2	N.D.	+0.4	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	+0.3	N.D.	+0.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.2	+0.2	N.D.	+0.5	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.1	N.D.	+0.3	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	+0.5	N.D.	+0.3	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.3	N.D.	+0.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.4	N.D.	-0.1	+0.8