Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_09310	PS417_09315	PS417_09320	PS417_09325	PS417_09330
carbon source	octanoate (C)	N.D.	N.D.	+0.3	-3.0	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.3	-1.9	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	N.D.	+0.4	-3.3	+0.4
carbon source	Trisodium citrate (C)	N.D.	N.D.	+0.1	-2.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.5	-0.9	-1.0
soil	soil sample 6; outgrowth in LB	N.D.	N.D.	+0.0	-1.4	-1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.2	-1.5	-0.6
stress	Tetracycline 0.001 mg/ml	N.D.	N.D.	+0.0	-2.1	-0.2
carbon source	octanoate (C)	N.D.	N.D.	+0.4	-2.6	-0.1
stress	methylglyoxal 0.032 vol%	N.D.	N.D.	-0.3	-1.6	-0.3
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	N.D.	N.D.	+0.3	-1.7	-0.8
carbon source	Trisodium citrate (C)	N.D.	N.D.	-0.1	-1.9	-0.2
stress	Doxycycline hyclate 0.001 mg/ml	N.D.	N.D.	-0.3	-1.7	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	N.D.	+0.0	-2.0	+0.1
solid stress	Fraxetin 3 mM; solid stress	N.D.	N.D.	+0.0	-2.2	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.2	-1.4	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.3	-0.8	-0.9
solid stress	Fraxetin 3 mM; solid stress	N.D.	N.D.	-0.2	-1.6	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	N.D.	N.D.	-0.2	-1.4	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	N.D.	+0.1	-1.5	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.1	+0.9	-1.3
motility	inner cut, LB soft agar motility assay	N.D.	N.D.	+0.3	-1.2	+0.7
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.1	-1.2	+0.9
liquid stress	80% Methanol 3 mM; liquid stress	N.D.	N.D.	+0.1	-1.1	+0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+1.3	-1.4	+0.2
soil	soil sample 8; outgrowth in LB	N.D.	N.D.	-0.2	-0.9	+1.1
phage	P. simiae Grant Run MOI 0.1	N.D.	N.D.	-0.0	-0.4	+1.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.0	+1.0	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	N.D.	-0.4	+3.0	-0.4
phage	JP1 MOI 1	N.D.	N.D.	+0.5	+0.9	+0.9