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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1821 and GFF1822 are separated by 162 nucleotides
GFF1822 and GFF1823 are separated by 15 nucleotides
GFF1823 and GFF1824 are separated by 37 nucleotides
GFF1824 and GFF1825 are separated by 84 nucleotides
GFF1821 - D-glycerate 2-kinase (EC 2.7.1.165), at 484,747 to 486,087
GFF1821
GFF1822 - 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26), at 486,250 to 487,692
GFF1822
GFF1823 - Mg(2+)-transport-ATPase-associated protein MgtC, at 487,708 to 488,424
GFF1823
GFF1824 - hypothetical protein, at 488,462 to 489,037
GFF1824
GFF1825 - Mg(2+) transport ATPase, P-type (EC 3.6.3.2), at 489,122 to 491,887
GFF1825
Group
Condition
GFF1821
GFF1822
GFF1823
GFF1824
GFF1825
complex community
Community=arabino-guar; Passage=4
-0.0
-0.8
-0.6
-0.5
+0.5
complex community
Community=Locust bean gum; Passage=4
-1.4
+0.3
-0.0
-0.2
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.4
-0.3
+0.0
-0.2
-0.2
no phage control
no phage control
-0.3
-0.0
-0.3
-0.2
-0.1
no phage control
no phage control
-0.7
-0.1
+0.0
+0.0
-0.0
complex community
Community=guar; Passage=4
-0.8
+0.4
-0.2
+0.0
-0.0
no phage control
no phage control
-0.3
+0.1
+0.1
-0.2
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.2
-0.1
+0.1
-0.3
+0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.1
+0.2
-0.0
-0.2
-0.4
complex community
Community=Locust bean gum; Passage=4
-0.4
-0.3
+0.2
-0.1
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.2
+0.3
-0.0
-0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.3
-0.1
+0.0
+0.2
-0.0
complex community
Community=arabino-guar; Passage=4
-0.5
+0.1
+0.4
+0.2
-0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.2
-0.3
-0.0
+0.3
-0.1
complex community
Community=Kojac gum; Passage=1
-0.4
+0.0
-0.0
+0.1
+0.3
complex community
Community=Locust bean gum; Passage=4
+0.4
-0.1
+0.2
-0.2
-0.3
complex community
Community=arabino-guar; Passage=4
+1.6
-0.8
-0.1
-0.5
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.5
-0.3
-0.0
-0.2
+0.1
vitamin
M9 with Supernatant from Cyptococcus
+0.5
-0.3
-0.0
+0.2
-0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.3
-0.3
+0.0
+0.2
+0.0
phage
phage_bap4
+0.3
+0.2
+0.1
-0.2
-0.0
vitamin
M9 with Supernatant from Cyptococcus
+0.3
-0.1
+0.1
+0.2
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.6
-0.4
+0.1
-0.0
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.3
-0.1
-0.0
+0.3
-0.1
complex community
Community=guar; Passage=4
+0.3
+0.3
-0.0
-0.2
+0.1
vitamin
M9 with Supernatant from Cyptococcus
+0.2
-0.0
-0.2
+0.5
-0.0
complex community
Community=arabino-guar; Passage=4
+0.4
+0.2
+0.5
-0.3
-0.1
complex community
Community=guar; Passage=4
+0.8
+0.4
+0.0
+0.0
+0.4
complex community
Community=Locust bean gum; Passage=4
+0.3
+0.5
+0.4
+0.4
+0.2
complex community
Community=Kojac gum; Passage=4
+0.9
+0.1
+0.6
+0.1
+0.2
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