Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_09220	PS417_09225	PS417_09230	PS417_09235	PS417_09240
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6	+0.2	+0.1	-4.9	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.8	-0.1	+0.3	-4.6	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	-0.6	-0.1	-4.9	N.D.
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	-0.2	+0.2	-4.6	N.D.
stress	methylglyoxal 0.032 vol%	+0.2	+0.2	+0.3	-4.7	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.5	-0.4	-1.6	N.D.
phage	JP1 MOI 0.1	-0.2	+0.1	-0.1	-2.9	N.D.
soil	soil sample 5; outgrowth in LB	-0.1	-0.6	+0.0	-2.4	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-0.2	-0.1	-2.7	N.D.
supernatant control	Vogels_fungal_media 0.1X	-0.5	-0.1	+0.1	-2.2	N.D.
phage	P. simiae OR1 MOI 0.1	-1.1	+0.2	-0.1	-1.4	N.D.
phage	P. simiae ORA MOI 0.1	+0.3	-0.4	-0.1	-2.1	N.D.
carbon source	RCH2_defined_glucose with MS_media 1x	-0.3	+0.1	-0.3	-1.9	N.D.
root	root sample 6; outgrowth in LB	+0.2	+0.6	+0.2	-3.2	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.4	-0.1	+0.1	-1.9	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.3	-1.6	+0.3	-0.5	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.5	-2.0	-0.0	+0.6	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.4	+0.1	+0.2	-1.8	N.D.
supernatant	LB 0.5x with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	+0.1	+0.2	-0.4	-1.8	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.1	+0.3	-2.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	-0.1	-0.3	-1.7	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.2	+0.3	-1.6	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.8	+0.5	+0.1	-1.3	N.D.
agar plate interaction control	Taped volatile agar plate with no fungus	-0.7	+0.6	-0.6	+0.9	N.D.
soil	soil sample 4; outgrowth in LB	+0.2	-0.7	+0.2	+1.4	N.D.
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.3	+0.5	-0.2	+1.5	N.D.
carbon source	Deoxyribonucleic from herring sperm 5 mg/mL (C)	+0.3	-0.1	-0.2	+1.9	N.D.
seeds	Growth on radish seeds for 72 hours	-0.5	-0.4	+0.1	+3.2	N.D.
seeds	Growth on radish seeds for 24 hours	+0.3	+0.2	+0.0	+2.2	N.D.
seeds	Growth on radish seeds for 72 hours	-0.3	+0.6	+0.0	+3.8	N.D.