Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_09195	PS417_09200	PS417_09205	PS417_09210	PS417_09215
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.9	-0.5	-5.4	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.1	+0.1	-5.4	+0.2
carbon source	octanoate (C)	+0.6	+0.2	+0.2	-6.2	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.1	-0.1	-5.0	+0.2
soil	soil sample 7; outgrowth in LB	-0.6	-0.6	-0.3	-4.4	+0.8
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.1	-4.0	-0.8	-0.8	+0.5
soil	soil sample 3; outgrowth in LB	-0.1	-1.2	-0.3	-4.0	+0.8
soil	soil sample 4; outgrowth in LB	-0.3	-1.3	-0.6	-2.5	-0.0
carbon source	octanoate (C)	+0.2	-0.2	+0.1	-4.6	+0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	-0.8	+0.2	-2.8	-0.6
soil	soil sample 5; outgrowth in LB	-0.6	-1.6	-0.7	-0.9	+0.2
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.0	-0.5	-0.4	-2.8	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.1	-0.6	-2.9	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	-0.3	-0.5	-2.7	-0.2
soil	soil sample 2; outgrowth in LB	-0.0	-1.2	-0.6	-1.7	+0.0
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.3	-0.0	-0.2	-3.2	+0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	-0.2	-0.2	-2.9	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.1	+0.2	+0.4	-3.7	+0.0
soil	soil sample 8; outgrowth in LB	-0.1	-0.4	-0.2	-2.8	+0.4
soil	soil sample 6; outgrowth in LB	-0.2	-0.3	-0.5	-2.6	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.2	-0.2	-2.7	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-1.4	-0.3	-1.1	+0.3
no phage control	Time6-nophage	+0.1	+0.3	-0.2	-2.7	-0.3
root	root sample 6; outgrowth in LB	-0.3	-0.1	-0.5	-2.4	+0.9
phage	P. simiae Grant Run MOI 10	+0.3	+0.5	-0.5	-2.5	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	+0.4	-1.6	-1.2	+0.5	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	-0.6	+0.2	-1.8	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9	+1.0	-0.3	+0.9	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.3	+2.3	-0.2	+0.7	+0.1
stress	methylglyoxal 0.032 vol%	+1.4	+2.2	+2.1	-0.0	+0.7