Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_09185	PS417_09190	PS417_09195	PS417_09200	PS417_09205
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.2	+0.5	+0.1	-4.0	-0.8
soil	soil sample 5; outgrowth in LB	-0.1	+0.3	-0.6	-1.6	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	+0.0	-0.0	+0.4	-1.6	-1.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.1	-0.4	-1.4	-0.3
soil	soil sample 4; outgrowth in LB	+0.1	+0.1	-0.3	-1.3	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.2	+0.0	-1.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.1	-0.9	-0.8	-0.0
stress	Nickel (II) chloride 1 mM	+0.0	+0.2	+0.0	-0.9	-0.9
soil	soil sample 7; outgrowth in LB	-0.1	+0.2	-0.6	-0.6	-0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	+0.1	+0.4	-0.9	-0.9
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	+0.0	+0.1	+0.2	-0.9	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.0	-0.3	-1.1	-0.3
soil	soil sample 3; outgrowth in LB	+0.1	+0.2	-0.1	-1.2	-0.3
solid stress	Fraxetin 3 mM; solid stress	-0.1	+0.3	+0.2	-1.0	-0.5
soil	soil sample 2; outgrowth in LB	+0.2	+0.5	-0.0	-1.2	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-0.1	+0.0	+0.3	-0.6	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.1	+0.2	-0.4	-1.1
phage	JP1 MOI 10	+0.3	+0.1	+0.4	-1.5	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.1	+0.1	+0.3	-1.0	-0.6
solid stress	Fraxetin 3 mM; solid stress	-0.2	+0.1	+0.4	-0.5	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.1	+0.3	+0.3	-0.7	-0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	+0.2	+0.7	-0.6	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-0.0	-0.9	+1.0	-0.3
phage	JP1 MOI 1	+0.2	+0.4	+0.5	-0.8	+0.1
carbon source	octanoate (C)	-0.4	+0.5	+0.6	+0.2	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	-0.3	+0.0	+0.6	+1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.1	-0.4	-0.3	+2.3	-0.2
motility	inner cut, LB soft agar motility assay	+0.2	+0.6	+0.1	+0.6	+0.4
stress	Nalidixic 0.025 mg/ml	+0.0	-0.2	+0.5	+0.7	+0.8
stress	methylglyoxal 0.032 vol%	-0.2	-0.4	+1.4	+2.2	+2.1