Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_09150	PS417_09155	PS417_09160	PS417_09165	PS417_09170
agar plate interaction control	Taped volatile agar plate with no fungus	-0.4	N.D.	-2.2	-0.4	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-2.2	N.D.	+0.0	+0.0	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.4	N.D.	-0.7	+0.0	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.5	N.D.	-1.6	+0.1	+0.0
carbon source	2'-Deoxyinosine 5 mM (C)	-0.9	N.D.	-1.0	+0.1	-0.0
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-1.2	N.D.	+0.1	-0.5	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-2.0	N.D.	+0.3	+0.2	-0.0
phage	P. simiae OR Antrim MOI 10	+0.3	N.D.	-1.1	-0.5	-0.2
supernatant control	Vogels_fungal_media 0.1X	-2.0	N.D.	+0.6	+0.1	+0.1
liquid stress	Scopoletin 3 mM; liquid stress	-1.6	N.D.	+0.5	-0.0	+0.2
phage	P. simiae Grant Run MOI 0.1	-0.6	N.D.	-0.4	-0.5	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.0	N.D.	+0.7	-0.1	-0.4
motility	inner cut, LB soft agar motility assay	-0.3	N.D.	-0.8	+0.3	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	N.D.	+0.5	+0.5	+0.3
phage	JP1 MOI 10	+1.2	N.D.	-1.0	-0.1	+0.0
no phage control	Time6-nophage	-0.5	N.D.	+0.7	+0.3	-0.2
carbon source	L-Valine (C)	+0.5	N.D.	+0.6	-0.2	-0.6
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.6	N.D.	+0.6	-0.4	-0.2
carbon source	Deoxyribonucleic from herring sperm 5 mg/mL (C)	+1.1	N.D.	-0.5	-0.2	+0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.1	N.D.	-0.3	-0.3	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.0	N.D.	-0.4	+0.4	-0.2
soil	soil sample 3; outgrowth in LB	+1.4	N.D.	-0.3	-0.0	+0.1
phage	JP1 MOI 1	+0.8	N.D.	+0.8	-0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	N.D.	+1.7	+0.2	-0.1
phage	P. simiae OR1 MOI 0.1	+1.7	N.D.	+0.0	-0.3	-0.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+1.2	N.D.	+0.5	-0.2	-0.1
phage	JP1 MOI 10	+1.2	N.D.	+0.0	+0.7	-0.4
carbon source	2-Deoxy-D-Ribose 10 mM (C)	+0.9	N.D.	+0.6	-0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.8	N.D.	+0.2	+0.0	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.4	N.D.	+1.0	-0.1	-0.1