Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_00080 and PS417_00085 are separated by 21 nucleotidesPS417_00085 and PS417_00090 overlap by 4 nucleotidesPS417_00090 and PS417_00095 are separated by 69 nucleotidesPS417_00095 and PS417_00100 are separated by 135 nucleotides PS417_00080: PS417_00080 - potassium transporter peripheral membrane component, at 17,327 to 18,700 _00080 PS417_00085: PS417_00085 - 16S rRNA methyltransferase, at 18,722 to 20,032 _00085 PS417_00090: PS417_00090 - methionyl-tRNA formyltransferase, at 20,029 to 20,982 _00090 PS417_00095: PS417_00095 - peptide deformylase, at 21,052 to 21,558 _00095 PS417_00100: PS417_00100 - peptidoglycan-binding protein, at 21,694 to 22,470 _00100
Group Condition PS417_00080 PS417_00085 PS417_00090 PS417_00095 PS417_00100
phage JP1 MOI 10 -2.9 -1.2 N.D. N.D. -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -2.7 N.D. N.D. -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -2.6 N.D. N.D. -0.1
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB -0.4 -2.0 N.D. N.D. -0.6
stress Gentamicin 0.008 mg/ml -2.6 -0.3 N.D. N.D. +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -2.2 N.D. N.D. -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -1.4 N.D. N.D. -1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 -1.5 N.D. N.D. -0.4
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.3 -2.0 N.D. N.D. -0.4
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -1.9 N.D. N.D. -0.4
phage P. simiae ORA MOI 10 -1.9 -0.3 N.D. N.D. -0.3
phage P. simiae Grant Run MOI 10 -2.0 -0.3 N.D. N.D. -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -1.1 N.D. N.D. -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -1.5 N.D. N.D. -0.5
phage Wcs_1 -1.1 -1.3 N.D. N.D. -0.1
phage P. simiae OR Antrim MOI 1 -1.1 -1.0 N.D. N.D. -0.3
phage JP1 MOI 10 -0.9 -1.5 N.D. N.D. -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -2.3 N.D. N.D. +0.5
carbon source L-Valine (C) -1.4 -1.1 N.D. N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -1.8 N.D. N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -0.5 -1.8 N.D. N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.9 -1.1 N.D. N.D. +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -1.1 N.D. N.D. +0.3
phage P. simiae ORA MOI 1 -1.4 -0.7 N.D. N.D. +0.7
phage JP1 MOI 1 -1.3 +1.0 N.D. N.D. -0.6
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.7 -1.7 N.D. N.D. +0.4
phage P. simiae ORA MOI 0.1 -2.0 +1.0 N.D. N.D. +0.4
carbon source L-Valine (C) -1.3 +1.2 N.D. N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.8 +1.2 N.D. N.D. -0.3
stress methylglyoxal 0.032 vol% +3.0 +0.8 N.D. N.D. -0.4
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