Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_09110	PS417_09115	PS417_09120	PS417_09125	PS417_09130
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.6	-0.8	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.1	-1.5	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.3	-0.4	-0.5
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	N.D.	-0.3	-0.8	-0.2
motility	inner cut, LB soft agar motility assay	N.D.	N.D.	-0.1	-0.8	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.1	-0.9	+0.1
ecofab	LB in EcoFAB_3.5mL	N.D.	N.D.	-0.1	-0.8	-0.0
soil	soil sample 5; outgrowth in LB	N.D.	N.D.	-0.3	-0.6	+0.0
motility_chemotaxis	Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.3	-0.4	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.2	-0.1	-0.5
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	N.D.	N.D.	-0.1	-0.7	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.1	-0.6	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.4	-0.5	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.1	-0.6	+0.2
supernatant control	Vogels_fungal_media 0.1X	N.D.	N.D.	+0.1	-0.6	+0.1
seeds	Growth on radish seeds for 72 hours	N.D.	N.D.	-0.5	+0.4	-0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	N.D.	-0.4	-0.1	+0.3
phage	P. simiae OR Antrim MOI 0.1	N.D.	N.D.	-0.2	-0.3	+0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.2	+0.5	-0.3
phage	P. simiae Grant Run MOI 10	N.D.	N.D.	-0.4	+0.4	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	N.D.	+0.4	+0.3	-0.2
seeds	Growth on radish seeds for 72 hours	N.D.	N.D.	-0.2	+0.7	+0.0
phage	JP1 MOI 10	N.D.	N.D.	+0.3	+0.4	-0.1
root	root sample 6; outgrowth in LB	N.D.	N.D.	-0.0	+0.7	+0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	N.D.	-0.5	+1.0	+0.2
phage	P. simiae ORA MOI 0.1	N.D.	N.D.	-0.1	+0.3	+0.5
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	N.D.	-0.0	+0.3	+0.5
phage	P. simiae OR Antrim MOI 1	N.D.	N.D.	+0.4	+0.4	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	-0.1	+0.7	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.4	+0.7	+0.1