Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_09065 and PS417_09070 are separated by 203 nucleotidesPS417_09070 and PS417_09075 are separated by 114 nucleotidesPS417_09075 and PS417_09080 are separated by 37 nucleotidesPS417_09080 and PS417_09085 are separated by 152 nucleotides PS417_09065: PS417_09065 - short-chain dehydrogenase, at 1,973,123 to 1,973,884 _09065 PS417_09070: PS417_09070 - GntR family transcriptional regulator, at 1,974,088 to 1,975,500 _09070 PS417_09075: PS417_09075 - chemotaxis protein, at 1,975,615 to 1,977,582 _09075 PS417_09080: PS417_09080 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 1,977,620 to 1,978,432 _09080 PS417_09085: PS417_09085 - hypothetical protein, at 1,978,585 to 1,979,355 _09085
Group Condition PS417_09065 PS417_09070 PS417_09075 PS417_09080 PS417_09085
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.1 +0.1 -0.1 -4.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -0.1 +0.0 -0.3 -3.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +0.1 +0.6 -0.1 -4.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.2 +0.4 -0.1 -3.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 -0.2 +0.5 +0.1 -4.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 -0.1 +0.3 +0.1 -4.0
soil soil sample 3; outgrowth in LB -0.6 -0.2 -0.1 -0.1 -2.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +0.3 +0.5 -0.1 -3.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 +0.2 +0.5 -0.0 -4.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 -0.0 +0.4 -0.3 -4.1
root root sample 6; outgrowth in LB -0.8 +0.3 -0.0 +0.2 -2.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.5 +0.5 +0.2 -3.2
soil soil sample 6; outgrowth in LB -0.6 +0.1 +0.2 -0.2 -2.6
carbon source Carbon source L-Citrulline 5 mM -0.0 -0.3 -0.3 -0.1 -2.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 +0.1 +0.6 -0.3 -3.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.3 -0.1 -0.1 -0.1 -2.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 -0.1 +0.2 -0.1 -2.8
motility outer cut, LB soft agar motility assay +0.4 -0.4 -0.1 -0.2 -2.0
rhizosphere rhizosphere sample 1; outgrowth in LB +0.3 -0.1 +0.5 -0.0 -3.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -0.4 +0.1 +0.2 -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.1 +0.5 +0.1 -2.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 +0.1 +0.4 +0.1 -2.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 -0.1 +0.8 -0.2 -2.9
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.2 +0.1 -0.0 +0.1 -2.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 -0.1 +0.7 +0.1 -3.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -0.4 +0.1 +0.2 -2.0
rhizosphere rhizosphere sample 2; outgrowth in LB -0.4 +0.4 +0.4 -0.1 -1.3
soil soil sample 4; outgrowth in LB -0.2 +0.5 +0.6 -0.0 -1.6
carbon source Carbon source L-Citrulline 10 mM +0.1 -0.5 -0.3 +0.3 +1.5
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.3 +0.3 -0.1 +1.7
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