Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_09050	PS417_09055	PS417_09060	PS417_09065	PS417_09070
soil	soil sample 3; outgrowth in LB	-0.1	N.D.	-0.1	-0.6	-0.2
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-0.2	N.D.	+0.1	-0.4	-0.6
phage	P. simiae Grant Run MOI 0.1	+0.3	N.D.	-0.4	-0.8	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	N.D.	+0.4	-0.5	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.0	N.D.	-0.4	-0.6	+0.4
exudates	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x	+0.2	N.D.	-0.2	-0.4	-0.2
phage	P. simiae Grant Run MOI 10	-0.2	N.D.	+0.3	-1.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	N.D.	-0.3	-0.5	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	N.D.	+0.0	-0.7	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	N.D.	+0.3	-0.4	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	N.D.	-0.7	-0.3	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	N.D.	-0.1	-0.7	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	N.D.	+0.1	+0.2	-0.4
soil	soil sample 5; outgrowth in LB	+0.6	N.D.	-0.3	-0.7	+0.2
soil	soil sample 6; outgrowth in LB	+0.3	N.D.	+0.1	-0.6	+0.1
no phage control	no phage control	+0.2	N.D.	+0.1	-0.6	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	N.D.	+0.4	-0.4	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	N.D.	-0.2	+0.7	-0.1
root	root sample 6; outgrowth in LB	+0.9	N.D.	-0.1	-0.8	+0.3
carbon source	L-Valine (C)	-0.3	N.D.	+0.1	-0.1	+0.7
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.5	N.D.	-0.0	-0.4	+0.4
seeds	Growth on radish seeds for 24 hours	+0.3	N.D.	+0.2	-0.5	+0.4
soil	soil sample 7; outgrowth in LB	+0.2	N.D.	+0.1	-0.4	+0.4
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.5	N.D.	-0.3	+0.3	-0.1
soil	soil sample 4; outgrowth in LB	+0.4	N.D.	-0.1	-0.2	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.3	N.D.	+0.3	+0.2	+0.3
supernatant control	Vogels_fungal_media 0.1X	+0.2	N.D.	+0.3	+0.5	+0.2
phage	JP1 MOI 1	+0.3	N.D.	+0.1	+0.8	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	N.D.	-0.2	+0.5	+0.4
seeds	Growth on radish seeds for 72 hours	+0.7	N.D.	+0.0	+0.4	+0.5