Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_09005	PS417_09010	PS417_09015	PS417_09020	PS417_09025
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-1.6	-0.4	-0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-2.3	-0.1	+0.4	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-2.1	+0.0	-0.2	+0.1
ecofab	LB in EcoFAB_3.5mL	N.D.	-1.6	-0.1	-0.0	-0.3
motility	inner cut, LB soft agar motility assay	N.D.	-0.7	-0.2	-0.9	-0.2
soil	soil sample 7; outgrowth in LB	N.D.	-0.9	-0.6	-0.1	-0.1
carbon source	L-Valine (C)	N.D.	-0.4	+0.0	-1.1	-0.2
phage	P. simiae ORA MOI 10	N.D.	-1.4	+0.2	-0.2	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-1.5	+0.4	+0.3	-0.4
seeds	Growth on radish seeds for 72 hours	N.D.	+0.3	-0.4	-0.5	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.6	-0.5	+0.4	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-1.0	-0.2	+0.5	-0.4
soil	soil sample 6; outgrowth in LB	N.D.	-0.8	+0.4	-0.8	+0.1
seeds	Growth on radish seeds for 24 hours	N.D.	-1.3	+0.2	+0.2	+0.0
motility	inner cut, LB soft agar motility assay	N.D.	-0.9	+0.2	-0.4	+0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.7	-0.5	-0.6	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.8	+0.4	+0.4	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.8	+0.4	-1.3	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.7	+0.5	+0.5	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+1.3	-0.1	-0.7	-0.1
phage	JP1 MOI 1	N.D.	-0.7	+0.2	+0.5	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+1.0	+0.2	-0.2	-0.4
stress	R2A with Fusaric 120 ug/mL	N.D.	-0.7	+0.5	+0.9	+0.2
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	N.D.	+1.1	+0.5	-0.8	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.4	+1.1	-0.4	+0.0
phage	P. simiae OR Antrim MOI 10	N.D.	+1.5	+0.1	-0.2	-0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	+1.2	+0.2	+0.1	-0.4
seeds	Growth on radish seeds for 72 hours	N.D.	+1.3	+0.0	+0.3	-0.4
phage	P. simiae OR1 MOI 0.1	N.D.	+0.8	+0.6	+0.6	-0.1
phage	P. simiae Grant Run MOI 10	N.D.	+2.1	+0.6	-0.1	-0.1