Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_00880	PS417_00885	PS417_00890	PS417_00895	PS417_00900
carbon source	L-Valine (C)	-0.6	-0.1	N.D.	-1.2	-3.8
carbon source	L-Valine (C)	+0.6	+0.1	N.D.	-1.1	-3.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	+0.5	N.D.	+0.2	-5.3
stress	L-Lysine 60 mM	-0.2	+0.2	N.D.	-0.7	-2.2
carbon source	Carbon source L-Ornithine 5 mM	+0.1	+0.0	N.D.	-0.4	-1.9
solid stress	Fraxetin 3 mM; solid stress	+0.0	+0.1	N.D.	-0.3	-1.8
phage	P. simiae OR1 MOI 0.1	-0.5	+0.0	N.D.	-0.6	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.3	N.D.	+0.1	-1.2
agar plate interaction control	Taped volatile agar plate with no fungus	-0.6	-0.3	N.D.	+0.1	-0.9
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9	-0.0	N.D.	+0.1	-0.9
phage	Wcs_1	-0.1	-0.2	N.D.	+0.2	-1.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	+0.2	N.D.	-0.0	-1.3
stress	Doxycycline hyclate 0.001 mg/ml	+0.2	-0.0	N.D.	-0.8	-0.8
liquid stress	Fraxetin 2 mM; liquid stress	-0.1	+0.1	N.D.	+0.1	-1.6
seeds	Growth on radish seeds for 72 hours	+0.4	+0.2	N.D.	-0.2	-1.3
phage	P. simiae ORA MOI 10	+0.4	+0.2	N.D.	-0.3	-1.1
root	root sample 6; outgrowth in LB	+0.0	+0.6	N.D.	-0.3	-1.0
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.4	+0.0	N.D.	+0.4	-1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	+0.4	N.D.	-0.2	-0.9
soil	soil sample 4; outgrowth in LB	+0.4	+0.5	N.D.	-0.2	-0.8
soil	soil sample 6; outgrowth in LB	+0.6	+0.5	N.D.	-0.4	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	+0.3	N.D.	-0.8	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4	+0.2	N.D.	+0.6	+1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	+0.7	N.D.	+0.1	+1.1
stress	methylglyoxal 0.032 vol%	+0.5	+0.3	N.D.	-0.3	+1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.2	N.D.	+0.4	+1.5
stress	Paraquat dichloride 0.002 mg/ml	-0.2	-0.0	N.D.	+0.8	+1.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.5	+0.2	N.D.	-0.2	+2.9
soil	soil sample 5; outgrowth in LB	+0.5	+0.4	N.D.	+0.1	+1.6
stress	Paraquat dichloride 0.008 mg/ml	+0.2	-0.1	N.D.	+1.2	+2.9