Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_08925 and PS417_08930 are separated by 90 nucleotidesPS417_08930 and PS417_08935 are separated by 157 nucleotidesPS417_08935 and PS417_08940 overlap by 4 nucleotidesPS417_08940 and PS417_08945 are separated by 89 nucleotides PS417_08925: PS417_08925 - membrane protein, at 1,944,434 to 1,945,171 _08925 PS417_08930: PS417_08930 - hypothetical protein, at 1,945,262 to 1,945,513 _08930 PS417_08935: PS417_08935 - thioesterase, at 1,945,671 to 1,946,147 _08935 PS417_08940: PS417_08940 - thioesterase, at 1,946,144 to 1,946,596 _08940 PS417_08945: PS417_08945 - heat shock protein 90, at 1,946,686 to 1,948,590 _08945
Group Condition PS417_08925 PS417_08930 PS417_08935 PS417_08940 PS417_08945
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.5 -0.7 -0.1 +0.3 -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -0.5 -0.1 +0.1 -2.1
motility outer cut, LB soft agar motility assay -0.5 -0.3 -0.4 -0.2 -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -1.4 -0.1 -0.2 -1.0
stress 1-ethyl-3-methylimidazolium chloride 200 mM -0.5 -1.0 -0.2 -0.2 -0.8
phage P. simiae OR Antrim MOI 10 -0.6 -1.1 +0.1 -0.8 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.7 -0.1 +0.1 -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.6 +0.2 -0.8 -1.1
root root sample 6; outgrowth in LB -1.1 -0.3 -0.4 +0.1 -0.4
motility outer cut, LB soft agar motility assay -0.0 -0.2 -0.1 +0.3 -1.9
soil soil sample 8; outgrowth in LB +0.5 -0.4 -0.3 -0.3 -1.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 +0.3 +0.0 +0.6 -1.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 +0.2 -0.1 +0.3 -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 +0.1 +0.4 +0.3 -1.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 +0.4 -0.1 +0.3 -1.8
carbon source L-Valine (C) +0.1 -1.0 -0.1 -1.5 +1.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.0 +0.0 -0.2 +0.6 -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 +0.0 -0.2 +0.9 -1.6
motility inner cut, LB soft agar motility assay -0.6 +0.0 +0.2 +0.6 -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 -0.9 -0.3 +0.0 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.8 -0.5 -0.1 +0.8 -1.6
soil soil sample 7; outgrowth in LB -0.7 +0.0 -0.2 +1.0 -0.5
phage P. simiae OR1 MOI 0.1 +0.6 -1.2 +0.4 -0.5 +0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 +1.1 +0.1 +0.8 -1.8
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 +1.1 +0.4 -0.3 -0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +0.3 +0.7 +0.7 -1.6
stress methylglyoxal 0.032 vol% -0.7 +0.4 +0.2 +1.4 +1.1
carbon source L-Valine (C) -0.4 +0.4 +0.0 +1.9 +0.9
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.9 +1.3 +0.7 +0.7 +0.1
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.5 +1.3 +0.4 +0.5 +1.3
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PS417_08925
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PS417_08930
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PS417_08940
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PS417_08945
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