Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_08905 and PS417_08910 are separated by 204 nucleotidesPS417_08910 and PS417_08915 overlap by 1 nucleotidesPS417_08915 and PS417_08920 are separated by 416 nucleotidesPS417_08920 and PS417_08925 are separated by 167 nucleotides PS417_08905: PS417_08905 - dihydrolipoamide dehydrogenase, at 1,938,848 to 1,940,284 _08905 PS417_08910: PS417_08910 - succinyl-CoA synthetase subunit beta, at 1,940,489 to 1,941,655 _08910 PS417_08915: PS417_08915 - succinyl-CoA synthetase subunit alpha, at 1,941,655 to 1,942,536 _08915 PS417_08920: PS417_08920 - branched-chain amino acid ABC transporter substrate-binding protein, at 1,942,953 to 1,944,266 _08920 PS417_08925: PS417_08925 - membrane protein, at 1,944,434 to 1,945,171 _08925
Group Condition PS417_08905 PS417_08910 PS417_08915 PS417_08920 PS417_08925
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. +0.2 -1.5
stress methylglyoxal 0.032 vol% N.D. N.D. N.D. -0.5 -0.7
agar plate interaction control Taped volatile agar plate with no fungus N.D. N.D. N.D. -0.5 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -0.4 -0.7
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.4 -0.6
motility inner cut, LB soft agar motility assay N.D. N.D. N.D. -0.4 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. -0.4 -0.6
motility outer cut, LB soft agar motility assay N.D. N.D. N.D. -0.4 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -0.2 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -0.2 -0.6
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.3 -0.6
soil soil sample 7; outgrowth in LB N.D. N.D. N.D. -0.2 -0.7
nophagecontrol Only library N.D. N.D. N.D. +0.1 -0.8
phage P. simiae Grant Run MOI 10 N.D. N.D. N.D. +0.1 -0.8
root root sample 6; outgrowth in LB N.D. N.D. N.D. +0.5 -1.1
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. N.D. N.D. +0.2 -0.8
soil soil sample 2; outgrowth in LB N.D. N.D. N.D. -0.5 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -0.8 +0.8
carbon source L-Histidine (C) N.D. N.D. N.D. +0.6 -0.4
phage Wcs_1 N.D. N.D. N.D. -0.4 +0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.2 +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -0.3 +0.8
carbon source L-Valine (C) N.D. N.D. N.D. +0.9 -0.4
carbon source L-Alanine (C) N.D. N.D. N.D. +0.9 +0.0
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. N.D. N.D. +0.4 +0.6
carbon source L-Alanine (C) N.D. N.D. N.D. +1.2 -0.1
carbon source L-Valine (C) N.D. N.D. N.D. +1.0 +0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. N.D. +0.3 +0.9
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. N.D. N.D. +1.0 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. N.D. +0.1 +1.5
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