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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF173 and GFF174 are separated by 100 nucleotides
GFF174 and GFF175 are separated by 36 nucleotides
GFF175 and GFF176 overlap by 1 nucleotides
GFF176 and GFF177 overlap by 4 nucleotides
GFF173 - Hexuronate utilization operon transcriptional repressor ExuR, at 204,593 to 205,327
GFF173
GFF174 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 205,428 to 206,258
GFF174
GFF175 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 206,295 to 206,960
GFF175
GFF176 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 206,960 to 207,619
GFF176
GFF177 - Glutamine ABC transporter, ATP-binding protein GlnQ, at 207,616 to 208,386
GFF177
Group
Condition
GFF173
GFF174
GFF175
GFF176
GFF177
complex community
Community=Kojac gum; Passage=4
+0.1
+0.2
-0.3
+0.1
-2.5
complex community
Community=arabino-guar; Passage=4
-0.1
-0.8
-0.3
+0.1
-0.9
complex community
Community=Locust bean gum; Passage=4
-0.4
+0.1
-0.2
-0.7
-0.5
complex community
Community=guar; Passage=4
-0.1
-1.0
+0.4
-0.2
-0.4
complex community
Community=guar; Passage=4
-0.5
-0.3
-0.7
-0.4
+0.6
phage
phage_bap4
+0.1
+0.1
-0.1
-0.5
-0.8
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
+0.2
-0.1
-0.1
-0.9
complex community
Community=guar; Passage=4
-0.4
-0.1
-0.2
+0.1
-0.2
complex community
Community=Locust bean gum; Passage=1
-0.0
-0.2
-0.0
-0.1
-0.6
complex community
Community=Locust bean gum; Passage=4
-0.2
-0.1
-0.1
+0.2
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.2
+0.2
-0.1
-0.1
-0.6
complex community
Community=Kojac gum; Passage=1
-0.0
-0.1
-0.1
+0.2
-0.7
vitamin
M9 with Supernatant from Cyptococcus
-0.1
+0.1
-0.2
-0.2
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
+0.1
-0.1
-0.0
-0.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
+0.3
-0.2
-0.3
-0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
-0.1
-0.0
+0.1
-0.5
complex community
Community=Locust bean gum; Passage=4
-0.6
+0.1
-0.4
+0.5
-0.2
complex community
Community=arabino-guar; Passage=4
+0.3
-0.3
-0.2
+0.3
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
-0.4
-0.2
+0.2
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.0
-0.1
-0.0
-0.3
+0.4
complex community
Community=Locust bean gum; Passage=4
+0.4
+0.0
-0.3
-0.4
+0.1
phage
phage_bap4
+0.1
+0.3
+0.1
-0.0
-0.5
complex community
Community=arabino-guar; Passage=4
-0.1
+0.6
-0.2
-0.2
-0.1
phage
phage_bap4
+0.2
+0.3
+0.0
-0.3
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.2
+0.1
-0.2
-0.1
+0.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
+0.2
-0.2
-0.2
+0.5
phage
phage_bap4
+0.2
+0.3
-0.1
-0.5
+0.6
complex community
Community=arabino-guar; Passage=4
-0.3
-0.6
+0.1
+0.2
+1.1
complex community
Community=guar; Passage=4
-0.1
+0.7
+0.4
+0.2
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.0
+0.1
+0.0
-0.0
+0.8
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