Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_08850 and PS417_08855 are separated by 332 nucleotidesPS417_08855 and PS417_08860 are separated by 193 nucleotidesPS417_08860 and PS417_08865 overlap by 4 nucleotidesPS417_08865 and PS417_08870 are separated by 303 nucleotides PS417_08850: PS417_08850 - beta (1-6) glucans synthase, at 1,924,299 to 1,925,852 _08850 PS417_08855: PS417_08855 - glycine/betaine ABC transporter substrate-binding protein, at 1,926,185 to 1,927,036 _08855 PS417_08860: PS417_08860 - small component of pyruvate transporter (yjcH-like) (from data), at 1,927,230 to 1,927,541 _08860 PS417_08865: PS417_08865 - large component of pyruvate transporter (actP-like) (from data), at 1,927,538 to 1,929,196 _08865 PS417_08870: PS417_08870 - type II citrate synthase, at 1,929,500 to 1,930,789 _08870
Group Condition PS417_08850 PS417_08855 PS417_08860 PS417_08865 PS417_08870
carbon source pyruvate (C) -0.0 -0.1 -1.8 -1.6 N.D.
carbon source pyruvate (C) -0.2 +0.2 -1.8 -1.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -0.3 -1.1 -0.1 N.D.
phage P. simiae OR1 MOI 0.1 -0.6 -0.4 -0.5 -0.2 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) -0.1 -0.5 -0.7 -0.4 N.D.
nophagecontrol Only library -0.7 -0.6 -0.3 -0.0 N.D.
carbon source D-Glucose-6-Phosphate (C) -0.2 -0.4 -0.5 -0.4 N.D.
motility outer cut, LB soft agar motility assay -1.2 -0.4 +0.3 -0.1 N.D.
carbon source Inosine (C) -0.4 +0.1 -0.4 -0.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.2 -0.4 -1.1 +0.1 N.D.
motility outer cut, LB soft agar motility assay -0.6 -0.8 +0.1 +0.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +0.1 -1.0 -0.3 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB -0.6 +0.1 -0.6 +0.2 N.D.
stress methylglyoxal 0.032 vol% +0.2 -0.4 -0.9 +0.2 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.4 -0.5 -0.4 -0.2 N.D.
seeds Growth on radish seeds for 72 hours +0.3 -0.8 +0.2 -0.3 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.3 +0.1 -1.0 +0.1 N.D.
phage Wcs_1 +0.6 -0.3 -0.6 -0.0 N.D.
soil soil sample 2; outgrowth in LB -0.6 +0.3 +0.8 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.5 +0.4 -0.4 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.3 -0.5 +0.7 +0.0 N.D.
soil soil sample 7; outgrowth in LB -0.6 +0.2 +0.5 +0.3 N.D.
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.2 +0.4 -0.5 +0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.2 +0.7 +0.1 -0.4 N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.9 -0.4 +0.2 +0.1 N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.7 +0.4 -0.2 +0.2 N.D.
carbon source Gly-Glu (C) -0.1 -0.0 +0.9 +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +0.0 +0.9 +0.2 N.D.
soil soil sample 4; outgrowth in LB -0.1 +0.7 +1.0 -0.1 N.D.
soil soil sample 3; outgrowth in LB +0.6 +0.8 +0.5 -0.0 N.D.
remove
PS417_08850
plot		 remove
PS417_08855
plot		 remove
PS417_08860		 remove
PS417_08865
plot		 remove
PS417_08870
plot