Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_08820	PS417_08825	PS417_08830	PS417_08835	PS417_08840
stress	R2A with Fusaric 120 ug/mL	-0.1	-0.2	-0.0	-1.9	-1.7
stress	R2A with Fusaric 120 ug/mL	+0.0	-0.2	-0.2	-2.1	-1.4
stress	R2A with Fusaric 120 ug/mL	-0.2	+0.0	-0.1	-2.2	-1.4
stress	R2A with Fusaric 120 ug/mL	+0.3	-0.3	-0.2	-1.7	-1.6
stress	R2A with Fusaric 120 ug/mL	-0.0	+0.2	-0.1	-1.9	-1.4
stress	R2A with Fusaric 120 ug/mL	+0.1	+0.3	-0.3	-1.7	-1.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	-0.5	-0.4	-0.0	-0.5
phage	P. simiae OR1 MOI 0.1	+0.1	-0.7	-0.8	-0.7	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-1.1	-0.3	+0.0	-0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	-1.5	+0.0	-0.2	+0.2
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+0.1	+0.2	+0.0	-1.0	-1.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-1.7	+0.4	-0.4	+0.3
root	root sample 6; outgrowth in LB	+0.5	-0.7	-0.9	-0.0	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	+0.3	+0.1	-0.3	-0.8	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-1.4	+0.3	+0.1	+0.2
carbon source	L-Valine (C)	+0.5	+0.1	-0.8	-0.4	-0.3
phage	Wcs_0.1	+0.6	-0.7	-0.5	+0.1	-0.4
carbon source	L-Valine (C)	-0.8	+0.6	-0.2	-0.1	-0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-1.0	+0.1	+0.4	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.9	+0.5	+0.4	-0.2
no phage control	no phage control	+0.2	-1.1	+0.2	+0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	-0.7	+1.4	+0.2	-0.5
phage	JP1 MOI 0.1	+0.5	-0.6	+0.4	-0.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	-0.7	+0.7	+0.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	+0.6	-0.7	+0.5	+0.2
seeds	Growth on radish seeds for 24 hours	+0.3	-0.3	+1.5	+0.1	-0.1
seeds	Growth on radish seeds for 72 hours	+0.5	+0.6	+0.4	-0.2	+0.9
phage	JP1 MOI 10	+0.1	+1.0	+0.5	+0.5	+0.4
carbon source	2'-Deoxyinosine 5 mM (C)	-0.1	+4.2	+0.2	+0.0	-0.1
carbon source	2'-Deoxyinosine 5 mM (C)	-0.5	+5.3	+0.5	-0.1	-0.1