Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_08815 and PS417_08820 are separated by 134 nucleotidesPS417_08820 and PS417_08825 are separated by 148 nucleotidesPS417_08825 and PS417_08830 are separated by 134 nucleotidesPS417_08830 and PS417_08835 are separated by 50 nucleotides PS417_08815: PS417_08815 - GlcG protein, at 1,918,663 to 1,919,103 _08815 PS417_08820: PS417_08820 - transposase, at 1,919,238 to 1,919,696 _08820 PS417_08825: PS417_08825 - TetR family transcriptional regulator, at 1,919,845 to 1,920,450 _08825 PS417_08830: PS417_08830 - membrane protein, at 1,920,585 to 1,921,499 _08830 PS417_08835: PS417_08835 - ABC transporter, at 1,921,550 to 1,922,338 _08835
Group Condition PS417_08815 PS417_08820 PS417_08825 PS417_08830 PS417_08835
stress R2A with Fusaric 120 ug/mL N.D. +0.0 -0.2 -0.2 -2.1
stress R2A with Fusaric 120 ug/mL N.D. -0.2 +0.0 -0.1 -2.2
stress R2A with Fusaric 120 ug/mL N.D. -0.1 -0.2 -0.0 -1.9
phage P. simiae OR1 MOI 0.1 N.D. +0.1 -0.7 -0.8 -0.7
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. -0.4 -1.5 +0.0 -0.2
stress R2A with Fusaric 120 ug/mL N.D. +0.3 -0.3 -0.2 -1.7
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.2 -1.7 +0.4 -0.4
stress R2A with Fusaric 120 ug/mL N.D. -0.0 +0.2 -0.1 -1.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.3 -1.1 -0.3 +0.0
supernatant control Vogels_fungal_media 0.1X N.D. -0.8 -0.6 -0.0 -0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.7 -0.5 -0.4 -0.0
stress R2A with Fusaric 120 ug/mL N.D. +0.1 +0.3 -0.3 -1.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.4 -1.4 +0.3 +0.1
no phage control Time6-nophage N.D. -0.1 -1.4 +0.1 -0.1
root root sample 6; outgrowth in LB N.D. +0.5 -0.7 -0.9 -0.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.4 -1.0 +0.1 +0.4
carbon source L-Valine (C) N.D. +0.5 +0.1 -0.8 -0.4
no phage control no phage control N.D. +0.2 -1.1 +0.2 +0.1
carbon source L-Valine (C) N.D. -0.8 +0.6 -0.2 -0.1
phage Wcs_0.1 N.D. +0.6 -0.7 -0.5 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.2 -0.9 +0.5 +0.4
phage JP1 MOI 0.1 N.D. +0.5 -0.6 +0.4 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +0.3 -0.7 +0.7 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. -0.3 -0.7 +1.4 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.5 +0.6 -0.7 +0.5
seeds Growth on radish seeds for 72 hours N.D. +0.5 +0.6 +0.4 -0.2
seeds Growth on radish seeds for 24 hours N.D. +0.3 -0.3 +1.5 +0.1
phage JP1 MOI 10 N.D. +0.1 +1.0 +0.5 +0.5
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -0.1 +4.2 +0.2 +0.0
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -0.5 +5.3 +0.5 -0.1
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