Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_08800 and PS417_08805 are separated by 165 nucleotidesPS417_08805 and PS417_08810 are separated by 10 nucleotidesPS417_08810 and PS417_08815 are separated by 256 nucleotidesPS417_08815 and PS417_08820 are separated by 134 nucleotides PS417_08800: PS417_08800 - tartronate semialdehyde reductase, at 1,914,782 to 1,915,672 _08800 PS417_08805: PS417_08805 - hydroxypyruvate isomerase, at 1,915,838 to 1,916,620 _08805 PS417_08810: PS417_08810 - glyoxylate carboligase (EC 4.1.1.47) (from data), at 1,916,631 to 1,918,406 _08810 PS417_08815: PS417_08815 - GlcG protein, at 1,918,663 to 1,919,103 _08815 PS417_08820: PS417_08820 - transposase, at 1,919,238 to 1,919,696 _08820
Group Condition PS417_08800 PS417_08805 PS417_08810 PS417_08815 PS417_08820
carbon source Inosine (C) N.D. -3.9 -3.0 N.D. +0.5
carbon source Inosine (C) N.D. -3.5 -2.8 N.D. +0.2
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -1.6 -2.9 N.D. -0.5
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -1.9 -2.1 N.D. -0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. -1.9 -1.7 N.D. +0.0
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. -1.6 -1.7 N.D. +0.1
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) N.D. -0.1 -1.4 N.D. -0.1
carbon source L-Valine (C) N.D. -0.3 -0.3 N.D. -0.8
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. -0.1 -0.3 N.D. -0.7
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.4 -0.3 N.D. -0.3
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) N.D. +0.2 -1.1 N.D. -0.0
supernatant control Vogels_fungal_media 0.1X N.D. -0.3 +0.1 N.D. -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.4 -0.2 N.D. -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.2 -0.5 N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.4 -0.3 N.D. +0.5
phage JP1 MOI 1 N.D. -0.3 -0.2 N.D. +0.4
soil soil sample 4; outgrowth in LB N.D. -0.3 -0.1 N.D. +0.6
phage JP1 MOI 1 N.D. +0.4 -0.5 N.D. +0.2
phage JP1 MOI 10 N.D. -0.4 +0.0 N.D. +0.6
phage P. simiae ORA MOI 0.1 N.D. -0.4 +0.1 N.D. +0.5
carbon source L-Valine (C) N.D. -0.4 +0.2 N.D. +0.5
phage JP1 MOI 0.1 N.D. -0.2 +0.3 N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +0.4 -0.3 N.D. +0.5
phage Wcs_0.1 N.D. +0.3 -0.1 N.D. +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.0 +0.2 N.D. +0.7
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. +0.5 +0.3 N.D. +0.1
root root sample 6; outgrowth in LB N.D. +0.5 -0.1 N.D. +0.5
motility outer cut, LB soft agar motility assay N.D. +0.4 +0.2 N.D. +0.3
phage JP1 MOI 10 N.D. +0.5 +0.4 N.D. +0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. +0.1 +0.4 N.D. +0.5
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