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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1726 and GFF1727 are separated by 89 nucleotides
GFF1727 and GFF1728 are separated by 188 nucleotides
GFF1728 and GFF1729 are separated by 110 nucleotides
GFF1729 and GFF1730 are separated by 706 nucleotides
GFF1726 - Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system, at 374,559 to 386,978
GFF1726
GFF1727 - no description, at 387,068 to 387,604
GFF1727
GFF1728 - D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4), at 387,793 to 389,034
GFF1728
GFF1729 - HIPA PROTEIN, at 389,145 to 390,371
GFF1729
GFF1730 - Dihydrofolate reductase homolog, at 391,078 to 391,734
GFF1730
Group
Condition
GFF1726
GFF1727
GFF1728
GFF1729
GFF1730
complex community
Community=guar; Passage=4
-0.1
-0.6
-0.4
-0.0
-1.1
complex community
Community=arabino-guar; Passage=4
-0.1
-0.3
+0.1
-0.4
-1.1
complex community
Community=Kojac gum; Passage=4
-0.1
-0.1
-0.0
-0.2
-0.9
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.0
-0.4
-0.0
-0.2
-0.5
complex community
Community=Locust bean gum; Passage=4
-0.1
-0.4
+0.1
-0.1
-0.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
-0.1
-0.1
-0.2
-0.5
phage
phage_bap4
-0.1
-0.1
-0.1
+0.1
-0.6
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.0
-0.6
-0.1
-0.1
-0.0
complex community
Community=Locust bean gum; Passage=4
-0.0
-0.7
-0.1
-0.2
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.0
-0.1
-0.2
-0.2
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
-0.4
-0.1
-0.1
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.0
-0.1
-0.2
-0.1
-0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.0
-0.1
-0.1
-0.2
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.0
-0.3
-0.0
-0.1
-0.2
vitamin
M9 with Supernatant from Cyptococcus
-0.0
-0.1
-0.1
-0.0
-0.3
phage
phage_bap4
-0.1
-0.1
-0.1
-0.1
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
-0.1
-0.1
-0.0
-0.3
vitamin
M9 with Supernatant from Cyptococcus
+0.0
-0.1
-0.1
-0.1
-0.2
complex community
Community=arabino-guar; Passage=4
-0.1
-0.7
+0.2
+0.2
-0.1
phage
phage_bap4
-0.0
-0.1
+0.1
+0.1
-0.3
complex community
Community=guar; Passage=4
-0.1
+0.1
+0.1
-0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.0
-0.3
-0.0
-0.1
+0.2
vitamin
M9 with Supernatant from Cyptococcus
-0.1
-0.1
-0.1
-0.1
+0.4
complex community
Community=Locust bean gum; Passage=4
+0.1
-0.1
-0.2
-0.2
+0.4
complex community
Community=guar; Passage=4
-0.0
+0.1
+0.2
+0.2
-0.2
complex community
Community=guar; Passage=4
-0.0
-0.2
+0.3
-0.1
+0.2
vitamin
M9 with Supernatant from Cyptococcus
+0.0
-0.3
+0.0
+0.2
+0.4
complex community
Community=Kojac gum; Passage=1
-0.1
-0.2
-0.0
+0.0
+0.6
complex community
Community=arabino-guar; Passage=4
+0.0
+0.1
+0.3
-0.4
+0.6
complex community
Community=arabino-guar; Passage=4
+0.0
+0.2
+0.2
+0.1
+1.1
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