Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_08740	PS417_08745	PS417_08750	PS417_08755	PS417_08760
carbon source	L-Valine (C)	-1.6	-0.5	N.D.	N.D.	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.3	-0.6	N.D.	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-1.4	-0.5	N.D.	N.D.	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-1.0	-0.5	N.D.	N.D.	-0.2
root	root sample 6; outgrowth in LB	-0.9	-0.3	N.D.	N.D.	-0.5
phage	Wcs_0.1	-0.8	-0.8	N.D.	N.D.	-0.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.7	-0.5	N.D.	N.D.	-0.4
carbon source	2'-Deoxyinosine 5 mM (C)	-1.0	-0.1	N.D.	N.D.	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.2	-0.5	N.D.	N.D.	+0.2
solid stress	Fraxetin 2 mM; solid stress	-1.2	-0.2	N.D.	N.D.	-0.1
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-1.0	-0.1	N.D.	N.D.	-0.3
soil	soil sample 8; outgrowth in LB	-1.1	+0.2	N.D.	N.D.	-0.5
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.8	-0.3	N.D.	N.D.	-0.4
stress	Doxycycline hyclate 0.001 mg/ml	-0.7	-0.7	N.D.	N.D.	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.2	-0.7	N.D.	N.D.	+0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	-0.5	N.D.	N.D.	+0.4
soil	soil sample 2; outgrowth in LB	-1.2	-0.0	N.D.	N.D.	+0.3
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.7	+0.3	N.D.	N.D.	-0.5
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-1.3	+0.1	N.D.	N.D.	+0.3
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.9	+0.3	N.D.	N.D.	-0.2
carbon source	D-Lactate (C)	-0.9	+0.3	N.D.	N.D.	-0.2
phage	Wcs_1	+0.2	-1.2	N.D.	N.D.	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Methionine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.1	+0.1	N.D.	N.D.	+0.3
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.8	+0.4	N.D.	N.D.	-0.3
agar plate interaction control	Taped volatile agar plate with no fungus	-0.9	+0.3	N.D.	N.D.	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.6	-0.3	N.D.	N.D.	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.8	N.D.	N.D.	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.5	N.D.	N.D.	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.0	+0.2	N.D.	N.D.	+0.1
phage	JP1 MOI 1	+1.2	+0.7	N.D.	N.D.	+0.3