Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_08710 and PS417_08715 are separated by 3 nucleotidesPS417_08715 and PS417_08720 overlap by 4 nucleotidesPS417_08720 and PS417_08725 overlap by 4 nucleotidesPS417_08725 and PS417_08730 overlap by 8 nucleotides PS417_08710: PS417_08710 - cytochrome C biogenesis protein CcmE, at 1,897,629 to 1,898,084 _08710 PS417_08715: PS417_08715 - cytochrome C biogenesis protein CcmF, at 1,898,088 to 1,900,076 _08715 PS417_08720: PS417_08720 - thiol:disulfide interchange protein, at 1,900,073 to 1,900,609 _08720 PS417_08725: PS417_08725 - cytochrome C, at 1,900,606 to 1,901,079 _08725 PS417_08730: PS417_08730 - cytochrome C, at 1,901,072 to 1,902,259 _08730
Group Condition PS417_08710 PS417_08715 PS417_08720 PS417_08725 PS417_08730
motility inner cut, LB soft agar motility assay N.D. N.D. N.D. N.D. -3.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -2.7
seeds Growth on radish seeds for 72 hours N.D. N.D. N.D. N.D. -2.5
carbon source acetate (C) N.D. N.D. N.D. N.D. -2.5
soil soil sample 6; outgrowth in LB N.D. N.D. N.D. N.D. -2.4
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. N.D. N.D. -2.3
soil soil sample 8; outgrowth in LB N.D. N.D. N.D. N.D. -2.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -2.2
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. N.D. N.D. N.D. -2.1
carbon source 2-Deoxy-D-Ribose (C) N.D. N.D. N.D. N.D. -2.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -2.0
carbon source Fumarate (C) N.D. N.D. N.D. N.D. -2.0
carbon source L-Valine (C) N.D. N.D. N.D. N.D. -1.9
seeds Growth on radish seeds for 72 hours N.D. N.D. N.D. N.D. -1.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -1.8
carbon source L-Leucine (C) N.D. N.D. N.D. N.D. -1.7
stress Choline chloride 300 mM N.D. N.D. N.D. N.D. -1.7
carbon source Gly-Glu (C) N.D. N.D. N.D. N.D. -1.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -1.6
carbon source L-Arginine (C) N.D. N.D. N.D. N.D. -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -1.6
carbon source Gly-Glu (C) N.D. N.D. N.D. N.D. -1.6
carbon source Fumarate (C) N.D. N.D. N.D. N.D. -1.6
stress Aluminum chloride 4 mM N.D. N.D. N.D. N.D. -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -1.6
phage Wcs_0.1 N.D. N.D. N.D. N.D. -1.6
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. N.D. N.D. +1.5
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. N.D. N.D. +1.6
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. N.D. N.D. N.D. +1.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. +4.1
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PS417_08710
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PS417_08725
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