Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_08680 and PS417_08685 overlap by 4 nucleotidesPS417_08685 and PS417_08690 are separated by 200 nucleotidesPS417_08690 and PS417_08695 overlap by 4 nucleotidesPS417_08695 and PS417_08700 are separated by 83 nucleotides PS417_08680: PS417_08680 - flagellar biosynthesis protein FlhB, at 1,893,216 to 1,893,545 _08680 PS417_08685: PS417_08685 - flagellar hook-length control protein FliK, at 1,893,542 to 1,895,119 _08685 PS417_08690: PS417_08690 - cytochrome C biogenesis protein CcmA, at 1,895,320 to 1,895,955 _08690 PS417_08695: PS417_08695 - heme transporter, at 1,895,952 to 1,896,620 _08695 PS417_08700: PS417_08700 - heme ABC transporter permease, at 1,896,704 to 1,897,459 _08700
Group Condition PS417_08680 PS417_08685 PS417_08690 PS417_08695 PS417_08700
nitrogen source Putrescine (N) -0.3 -4.1 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -3.9 N.D. N.D. N.D.
carbon source Putrescine (C) -0.4 -3.7 N.D. N.D. N.D.
carbon source L-Valine (C) -1.0 -2.5 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 -2.6 N.D. N.D. N.D.
soil soil sample 7; outgrowth in LB -1.6 -1.6 N.D. N.D. N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -2.6 N.D. N.D. N.D.
soil soil sample 8; outgrowth in LB -1.1 -2.0 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.1 -3.0 N.D. N.D. N.D.
phage JP1 MOI 10 -0.8 -1.9 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.0 N.D. N.D. N.D.
soil soil sample 5; outgrowth in LB -0.3 -2.3 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.2 -2.7 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -2.1 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -2.2 N.D. N.D. N.D.
solid stress Scopoletin 0.5 mM; solid stress -0.2 -2.2 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.2 -2.1 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 -2.9 N.D. N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 -1.6 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -1.9 N.D. N.D. N.D.
phage P. simiae OR1 MOI 0.1 -0.5 -1.8 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.0 -1.3 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.2 -2.0 N.D. N.D. N.D.
carbon source Putrescine (C) -0.2 -1.9 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.3 -1.8 N.D. N.D. N.D.
motility inner cut, LB soft agar motility assay -0.5 -1.6 N.D. N.D. N.D.
phage P. simiae ORA MOI 0.1 +0.8 -2.0 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 -1.6 N.D. N.D. N.D.
seeds Growth on radish seeds for 24 hours -0.7 +1.4 N.D. N.D. N.D.
stress Gentamicin 0.008 mg/ml -0.1 +3.0 N.D. N.D. N.D.
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