Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_08655 and PS417_08660 are separated by 54 nucleotidesPS417_08660 and PS417_08665 are separated by 79 nucleotidesPS417_08665 and PS417_08670 are separated by 76 nucleotidesPS417_08670 and PS417_08675 overlap by 17 nucleotides PS417_08655: PS417_08655 - pseudouridine synthase, at 1,889,413 to 1,890,303 _08655 PS417_08660: PS417_08660 - hypothetical protein, at 1,890,358 to 1,890,579 _08660 PS417_08665: PS417_08665 - molybdopterin-guanine dinucleotide biosynthesis protein A, at 1,890,659 to 1,891,261 _08665 PS417_08670: PS417_08670 - molybdopterin biosynthesis protein B, at 1,891,338 to 1,891,877 _08670 PS417_08675: PS417_08675 - molybdenum cofactor biosynthesis protein MoaA, at 1,891,861 to 1,893,087 _08675
Group Condition PS417_08655 PS417_08660 PS417_08665 PS417_08670 PS417_08675
nitrogen source nitrate (N) +0.0 N.D. -4.5 -4.5 -2.0
carbon source Inosine (C) +0.1 N.D. +0.0 -3.4 -2.5
carbon source Inosine (C) -0.3 N.D. -0.2 -2.6 -2.5
carbon source 2-Deoxy-D-Ribose (C) -0.1 N.D. -0.2 -3.2 -1.9
carbon source octanoate (C) -0.4 N.D. -2.4 -2.2 -0.3
carbon source 2-Deoxy-D-Ribose (C) -0.3 N.D. -0.4 -3.0 -1.1
carbon source 2-Deoxy-D-Ribose (C) -0.4 N.D. -0.2 -2.8 -1.3
carbon source octanoate (C) -0.2 N.D. -2.3 -2.1 -0.2
carbon source 2'-Deoxyinosine 5 mM (C) -1.0 N.D. -0.8 -1.8 -0.7
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.1 N.D. +0.1 -2.1 -2.0
carbon source 2-Deoxy-D-Ribose (C) -0.3 N.D. +0.0 -2.7 -0.9
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) -0.3 N.D. -0.3 -1.7 -1.1
carbon source 2'-Deoxyinosine 5 mM (C) -0.8 N.D. -0.0 -2.4 -0.2
stress 2-Furfuraldehyde 0.03 vol% -0.2 N.D. -0.9 -1.4 -0.8
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) +0.0 N.D. -0.1 -2.5 -0.8
stress 2-Furfuraldehyde 0.06 vol% -0.2 N.D. -0.7 -1.5 -1.0
solid stress Fraxetin 3 mM; solid stress -0.5 N.D. -1.6 -0.9 -0.2
carbon source Carbon source L-Ornithine 5 mM -0.3 N.D. -0.8 -1.4 -0.6
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.2 N.D. +0.1 -2.1 -0.8
solid stress Fraxetin 3 mM; solid stress -0.7 N.D. -0.6 -1.4 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 N.D. -0.9 -1.4 -0.7
solid stress Fraxetin 3 mM; solid stress -0.3 N.D. -1.4 -0.9 -0.1
rhizosphere rhizosphere sample 1; outgrowth in LB -0.2 N.D. -1.2 -0.7 -0.5
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.5 N.D. +0.7 -1.5 -1.2
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.2 N.D. +0.4 -1.8 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 N.D. -0.9 -1.0 -0.3
root root sample 6; outgrowth in LB +0.5 N.D. -1.1 -1.0 -0.1
soil soil sample 7; outgrowth in LB +0.7 N.D. -1.0 -1.0 -0.1
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.3 N.D. +1.2 +1.1 -0.2
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.3 N.D. +1.1 +1.0 +0.2
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